Job Description P0AAH8 Confidence 96.19% Date Thu Jan 5 11:12:57 GMT 2012 Rank 304 Aligned Residues 126 % Identity 17% Template c3io5B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:recombination and repair protein; PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4 Resolution 2.40 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	G	Q	T	L	A	I	I	G	E	N	G	S	G	K	S	T	L	A	K	M	L	A	G	M	I	E	P	T	S	G	E	L	L	I	D	D	H	P	L	H	F	G	D	Y	S	F	R	S	Q	R	I	R	M	I	F	Q	D	P	S	T	S	L	N	P	R	Q	R	I	S	Q	I	L	D	F	P	L	R	L
Query Conservation
Alig confidence					.																																																				.	.	.
Template Conservation					.																																																				.	.	.
Template Sequence		Q	S	G	.	L	L	I	L	A	G	P	S	K	S	F	K	S	N	F	G	L	T	M	V	S	S	Y	M	R	Q	Y	P	D	A	V	C	L	F	Y	D	S	E	F	G	I	T	P	A	Y	L	R	S	M	G	V	.	.	.	D	P	E	R	V	I	H	T	P	V	Q	S	L	E	Q	L	R	I	D	M	V	N
Template Known Secondary structure			S		.								S	S	S	S																	T	T								S	S											T	T		.	.	.		G	G	G							S	B
Template Predicted Secondary structure					.																																																				.	.	.
Template SS confidence
		52	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		N	T	D	L	E	P	E	Q	R	R	K	Q	I	I	E	T	M	R	M	V	G	L	L	P	D	H	V	S	Y	Y	P	H	M	L	A	P	G	Q	K	Q	R	L	G	L	A	R	A	L	I	L	R	P	K	V	I	I	A	D	.	.	.	E	A	L	A	S	L	D	M	S	M	R	S	Q	L	I	N	L	M	L
Query Conservation																																																												.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	D	A	I	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	K	V	V	V	F	I	D	S	L	G	N	L	A	S	K	T	R	A	K	T	M	K	S	L	F	R	I	V	T
Template Known Secondary structure					T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										S	T	T		B
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.																																											.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	Q	E	K	Q	G	I	S	Y	I	Y	V	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Y	F	S	T	K	N	I	P	C	I	A	I	N	H
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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