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Job DescriptionP0AAH8
Confidence100.00%DateThu Jan 5 11:12:57 GMT 2012
Rank20Aligned Residues235
% Identity22%Templatec3g5uB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSF
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Template Sequence  VQFSGVVFNYPTR. . . . . . PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW
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   1031........1040... ......1050.........1060.........1070.........1080.........1090.........1100....
 
   86...90.........100.........110.........120.... .....130.........140.........150.........160
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Query Sequence  RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPE. . . . . QRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG
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Template Sequence  LRAQLGIVSQEPILF. . . DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA
Template Known Secondary structure  TTS
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SSTTTGGG
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   1105....1110......... 1120.........1130.........1140.........1150.........1160.........1170.........1180.
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTADVLA
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Template Sequence  IARALVRQPHILLLDEATSALDTESEKVVQEALDKARE. . GRTCIVIAHRLSTIQ. NADLIVVIQNGKVKEHGTHQQLLA
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   1182.......1190.........1200.........1210......... 1220.........1230.... .....1240.........1250........
 
   241........250....
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Query Sequence  SPLHELTKRLIAGH
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Template Sequence  Q. . KGIYFSMVSVQ
Template Known Secondary structure  S..
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   1259 1260.........1270
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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