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Job DescriptionP0AAH8
Confidence100.00%DateThu Jan 5 11:12:57 GMT 2012
Rank5Aligned Residues239
% Identity29%Templatec1oxtB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF
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Template Sequence  MVR. . IIVKNVSKVFKK. . . . . . . GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS
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..GG.......GT
TT


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   1.. ......10..... ....20.........30.........40.........50.........60.........70.
 
   81.... ....90.........100.........110.........120.........130.........140.........150.......
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Query Sequence  GDYSF. . . RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQ
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Template Sequence  NGKLIVPPEDRKIGMVFQTW. . ALYPNLTAFENIAFPLTNM. KMSKEEIRKRVEEVAKILDI. HHVLNHFPRELSGGQQQ
Template Known Secondary structure  TTSS
GGGS

TT
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GGGTTS.S

TT
.GGGTTS
GGGS
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   72.......80.........90. ........100.........110 .........120.........130 .........140.......
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTAD
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Template Sequence  RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED
Template Known Secondary structure  TT

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   148.150.........160.........170.........180.........190.........200.........210.........220.......
 
   238.240.........250..
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Query Sequence  VLASPLHELTKRLIA
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Template Sequence  LYDNPVSIQVASLIG
Template Known Secondary structure  S
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   228.230.........240..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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