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Job DescriptionP39263
Confidence3.52%DateThu Jan 5 11:58:35 GMT 2012
Rank56Aligned Residues122
% Identity10%Templatec3k3gA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   154.....160.........170.........180.........190.........200.........210.........220.........230...
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Query Sequence  LFILFSLGGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRI
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Template Sequence  ISALFAVIGSLVGLCTALIMHSPETPVRLGLYGFNSVLCGIAMGGIFFYLNIRTFLYALGCMVLGAIATGAFSVLLSPIG
Template Known Secondary structure  TT

TTTTTTTTSB

STGGGT
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   210.........220.........230.........240.........250.........260.........270.........280.........
 
   234.....240.........250.........260.........270.....
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Query Sequence  VVWVIATLIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQA
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Template Sequence  MPALTWPFIVVTWLFLFAGSMFRNIAQVPTEKAGTPEDNLRS
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TTGGG
TTS
B

TTT


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   290.........300.........310.........320.........330.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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