Job Description P19926 Confidence 9.26% Date Thu Jan 5 11:37:37 GMT 2012 Rank 51 Aligned Residues 61 % Identity 13% Template d2ca1a1 SCOP info Nucleocapsid protein dimerization domain Nucleocapsid protein dimerization domain Coronavirus nucleocapsid protein Resolution 2.6

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.							.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		L	T	A	L	D	F	K	P	Y	Q	L	H	D	Q	N	E	R	T	P	.	.	.	.	.	.	I	G	G	K	I	V	F	Q	R	W	H	D	S	K	A	N	R	D	L	M	K	I	E	Y	V	Y	Q	S	A	E	Q	L	R	N	A	D	A	L	T	L	Q	A	P	A	Q	R	V	T	L	E	L	S	G	C	P
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.										.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation																																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Sequence		M	N	E	E	G	I	K	D	G	R	V	T	A	M	L	N	L	V	P	S	S	H	A	C	L	F	G	S	R	V	T	P	K	L	.	.	.	.	Q	L	D	G	L	H	L	R	F	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	V	V	P	.	C	D
Template Known Secondary structure						G	G	G	S								T	T	S										S							.	.	.	.		T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	T	T
Template Predicted Secondary structure																																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.																								.	.	.	.	.		.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	A	D	G	F	C	P	M	D	K	F	D	S	V	L	N	E	A	V
Query Conservation
Alig confidence				.	.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence		D	P	.	.	.	.	.	Q	F	D	N	Y	V	K	I	C	D	Q	C	V
Template Known Secondary structure		S	T	.	.	.	.	.	T												B
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		310	.						.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions