Job Description P0AFK4 Confidence 100.00% Date Thu Jan 5 11:26:35 GMT 2012 Rank 1 Aligned Residues 270 % Identity 19% Template c3fh6F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Resolution 4.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.								.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.														.
Query SS confidence																																				.	.	.	.	.	.	.														.
Query Sequence		M	I	V	T	I	V	G	W	L	V	L	F	V	F	L	P	N	L	M	I	I	G	T	S	F	L	T	R	D	D	A	S	F	V	.	.	.	.	.	.	.	K	M	V	F	T	L	D	N	Y	T	R	L	L	.	D	P	L	Y	F	E	V	L	L	H	S	L	N	M	A	L	I	A	T	L	A	C	L	V	L
Query Conservation																																				.	.	.	.	.	.	.														.
Alig confidence																																				.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		Y	V	Y	P	G	M	A	G	M	G	L	F	V	L	F	P	L	V	C	T	I	A	I	A	F	T	N	Y	S	S	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	K	N	F	T	R	V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F	V	W	T	V	V	F	S	L	I	T	V	F	L
Template Known Secondary structure														T									T	T	S	S	S	S		S	S	S		S	S											T				T	T					S		S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		73	.	.	.	.	.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.
Predicted Secondary structure										.	.	.	.																																																											.	.	.
Query SS confidence										.	.	.	.																																																											.	.	.
Query Sequence		G	Y	P	F	A	W	F	L	.	.	.	.	A	K	L	P	H	K	V	R	P	L	L	L	F	L	L	I	V	P	F	W	T	N	S	L	I	R	I	Y	G	L	K	I	F	L	S	T	K	G	Y	L	N	E	F	L	L	W	L	G	V	I	D	T	P	I	R	I	M	F	.	.	.	T	P	S	A	V	I	I
Query Conservation										.	.	.	.																																																											.	.	.
Alig confidence										.	.	.	.																																																											.	.	.
Template Conservation
Template Sequence		T	V	A	V	G	M	V	L	A	C	L	V	Q	W	E	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q	S	F	G	E	I	N	M	M	L	S	A	L	F	G	V	K	P	A	W	F	S	D	P	T	T	A	R	T	M	L	I	I
Template Known Secondary structure														T		S	S	S	S															S		S											S		S	S	S	S										S	S					S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		G	L	V	Y	I	L	L	P	F	M	V	M	P	L	Y	S	S	I	E	K	L	D	K	P	L	L	E	A	A	R	D	L	G	A	S	K	L	Q	T	F	I	R	I	I	I	P	L	T	M	P	G	I	I	A	G	C	L	L	V	M	L	P	A	M	G	L	F	Y	V	S	D	L	M	G	G	A	K	N	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	L	K	A	I	P	D	D	L	Y	E	A	S	A	M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L	L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L	I	Q	L	L	T	N	G	G	P	D	R
Template Known Secondary structure																						S															S							T	T	T	T	T	T																	T										S	S		S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
												224	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.													.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.													.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	L	I	G	N	V	I	K	V	Q	F	L	.	.	.	N	I	R	D	W	P	F	G	A	A	T	S	I	T	L	T	I	V	M	G	L	M	L	L	V	Y	W	R	A	S	R	L	L	N	K
Query Conservation		.	.	.	.	.	.	.	.	.	.													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G	G	Q	D	F	G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L	A	I	V	N	L	K	A	T	R	M	K	F	D
Template Known Secondary structure		S	S		S	S	S			S	S										T	T		S	S	S	S		S	S																										S	S
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions