Job Description P0AFK4 Confidence 1.66% Date Thu Jan 5 11:26:35 GMT 2012 Rank 42 Aligned Residues 90 % Identity 10% Template c3e8gB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:potassium channel protein; PDBTitle: crystal structure of the the open nak channel-na+/ca2+ complex Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	Q	T	F	I	R	I	I	I	P	L	T	M	P	G	I	I	A	G	C	L	L	V	M	L	P	A	M	G	L	F	Y	V	S	D	L	M	G	G	A	K	N	L	L	I	G	N	V	I	K	V	Q	F	L	N	I	R	D	W	P	F	G	A	A	T	S	I	T	L	T	I	V	M	G	L	M	L	L	V
Query Conservation
Alig confidence																																							.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		K	D	K	E	F	Q	V	L	F	V	L	T	I	L	T	L	I	S	G	T	I	F	Y	S	T	V	E	G	L	R	P	I	D	A	L	Y	F	.	.	.	.	S	V	V	T	L	T	T	V	G	D	G	N	F	S	P	Q	T	D	F	G	K	I	F	T	I	L	Y	I	F	I	G	I	G	L	V	F	G	F	I
Template Known Secondary structure																												S											.	.	.	.						T	T				S	S					S
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		261	.	.	.						.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		Y	W	R	A	.	.	.	.	.	S	R	L	L	N	K	K	V	E	L
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.
Template Conservation
Template Sequence		H	K	L	A	V	N	V	Q	L	P	S	I	L	S	N	L	V	P	R
Template Known Secondary structure								T										S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions