Job Description P0AFK4 Confidence 100.00% Date Thu Jan 5 11:26:35 GMT 2012 Rank 8 Aligned Residues 243 % Identity 19% Template c3d31D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		M	I	V	T	I	V	G	W	L	V	L	F	V	F	L	P	N	L	M	I	I	G	T	S	F	L	T	R	D	D	A	S	F	V	K	M	V	F	T	L	D	N	Y	T	R	L	L	.	D	P	L	Y	F	E	V	L	L	H	S	L	N	M	A	L	I	A	T	L	A	C	L	V	L	G	Y	P	F	A	W	F
Query Conservation																																																	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	S	F	L	L	L	V	L	F	L	F	I	F	L	T	L	S	N	M	I	F	E	Q	I	T	E	.	.	.	.	.	.	.	.	.	.	.	D	F	S	G	L	V	K	A	A	G	N	R	S	V	I	S	S	I	F	L	S	L	Y	A	G	F	L	A	T	L	L	A	L	L	L	G	A	P	T	G	Y	I
Template Known Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.												.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	L	P	H	K	V	R	P	L	L	L	F	L	L	I	V	P	F	W	T	N	S	L	I	R	I	Y	G	L	K	I	F	L	S	T	K	G	Y	L	N	E	F	L	L	W	L	G	V	I	D	T	P	I	R	I	M	F	T	P	S	A	V	I	I	G	L	V	Y	I	L	L	P	F	M	V	M	P	L
Query Conservation
Alig confidence																																																							.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		L	A	R	F	D	F	P	G	K	R	L	V	E	S	I	I	D	V	P	V	V	V	P	H	T	V	A	G	I	A	L	L	T	V	F	G	S	R	G	L	I	G	E	P	L	E	S	Y	I	Q	F	R	D	.	.	.	.	.	.	A	L	P	G	I	V	V	A	M	L	F	V	S	M	P	Y	L	A	N	S	A
Template Known Secondary structure			T	T				T	T										G	G	G	T	S														S	T	T	S	T	T	T	G	G	G	T	T	T				T	T	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	S	I	E	K	L	D	K	P	L	L	E	A	A	R	D	L	G	A	S	K	L	Q	T	F	I	R	I	I	I	P	L	T	M	P	G	I	I	A	G	C	L	L	V	M	L	P	A	M	G	L	F	Y	V	S	D	L	M	G	G	A	K	N	L	L	I	G	N	V	I	K	V	Q	F	L	N	I	R	D
Query Conservation
Alig confidence																																																															.																.
Template Conservation																																																															.																.
Template Sequence		R	E	G	F	K	S	V	D	P	R	L	E	N	A	A	R	S	L	G	A	P	L	W	K	A	F	F	F	V	T	L	P	L	S	A	R	Y	L	L	I	G	S	V	M	T	W	A	R	A	I	S	E	F	G	A	V	V	I	L	A	Y	.	Y	P	M	V	G	P	T	L	I	Y	D	R	F	I	S	.	Y	G
Template Known Secondary structure								S											T	T										T																						T											.	T	T														.	S	T
Template Predicted Secondary structure																																																															.																.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	F	G	A	A	T	S	I	T	L	T	I	V	M	G	L	M	L	L	V	Y	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	A	S	R	P	I	A	V	L	L	I	L	V	T	L	S	I	F	L	V	I	R
Template Known Secondary structure		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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