Job Description P0A8N5 Confidence 90.59% Date Thu Jan 5 11:08:20 GMT 2012 Rank 114 Aligned Residues 219 % Identity 21% Template c3hxxA_ PDB info PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp Resolution 2.11 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.					.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																																				.	.	.	.
Query SS confidence																																																																				.	.	.	.
Query Sequence		S	K	I	L	A	A	I	R	Q	F	M	V	A	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E	.	.	.	.	R	V	F	E	I	N	R	N	F	R
Query Conservation																																																																				.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	I	R	Q	A	F	L	D	F	F	H	S	K	G	H	Q	V	V	A	S	S	S	L	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	N	D	P	T	L	L	F	T	N	A	G	M	N	Q	F	K	D	V	F	L	G	L	D	K	R	N	Y	S	R	A	T	T	S	Q	R	C	V	R
Template Known Secondary structure															T	T									S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S	S		S	S			S	T	T	G	G	G						T	S	S			S		S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
											264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	N	E	G	I	S	V	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	Y	G	E	H	V	F	D	F	G	K	P	F	E	K	L	T	M	R	E	A	I	K
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																	.								.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.								.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	G	K	H	N	D	L	E	N	V	G	Y	T	A	R	H	H	T	F	F	E	M	L	G	.	N	F	S	F	G	D	Y	.	.	.	.	.	F	K	L	D	A	I	L	F	A	W	L	L	L	T	S	E	K	W	F	A	L	P	K	E	R	L	W	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T				T	T	T	T	T	T	S	S	S			S							.				S	S	S		.	.	.	.	.																T	T	T	T				G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.								.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.																	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.						.	390	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Query Sequence		K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A	L	A	E	S	I	G	I	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	.	.	.	.	.	F	I	T	E	Y
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	V	Y	E	S	D	D	E	A	Y	E	I	W	E	K	E	V	G	I	P	R	E	R	I	I	R	I	G	D	N	K	G	A	P	Y	A	S	D	N	F	W	Q	M	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	P	C	G	P	C	T	E	I	F	Y	D	H
Template Known Secondary structure		.	.	.	.	.	.	.	.			T	T											T	T				G	G	G						S	T	T	S	S	T	T		B	T	T				S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.															.	.	.	.	.	180	.	.	.	.	.	.	.	.
		394	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		P	A	E	V	.	.	S	P	L	A	R	R	N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P
Query Conservation						.	.
Alig confidence						.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	D	H	I	W	G	G	P	P	G	S	P	E	E	D	G	D	R	Y	I	E	I	W	N	I	V	F	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	N	R	Q	A	D	G	T	M	E	P	L	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Template Known Secondary structure			T	T	S					T	T	S	T	T	T	T	S	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.																								.	.	.	220	.	.	.	.	.	.	.	.	.	230	.														.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	G	L	G	I	G	I	D	R	M	I	M	L	F	T	N	S	H	T	I	R	D	V	I	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	D	T	G	M	G	L	E	R	I	A	A	V	L	Q	H	V	N	S	N	Y	D	I	D	L	F
Template Known Secondary structure																	T	T		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions