Job Description P0A8N5 Confidence 100.00% Date Thu Jan 5 11:08:20 GMT 2012 Rank 3 Aligned Residues 483 % Identity 55% Template c3e9hB_ PDB info PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine Resolution 2.10 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		D	F	N	D	E	L	R	N	R	R	E	K	L	A	A	L	R	Q	Q	G	V	.	A	F	P	N	D	F	R	R	D	H	T	S	D	Q	L	H	E	E	F	D	A	K	D	N	Q	E	L	E	S	L	N	I	E	V	S	V	A	G	R	M	M	T	R	R	I	M	G	K	A	S	F	V	T	L	Q	D	V	G
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		E	L	N	D	Q	L	R	V	R	R	E	K	L	K	K	I	E	E	L	G	V	D	P	F	G	K	R	F	E	R	T	H	K	A	E	E	L	F	E	L	Y	G	D	L	S	K	E	E	L	E	E	Q	Q	I	E	V	A	V	A	G	R	I	M	T	K	R	G	M	G	K	A	G	F	A	H	I	Q	D	V	T
Template Known Secondary structure				T															T	T	T			T	T							S											T	T	S																									T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	I	Q	L	Y	V	A	R	D	S	L	P	E	G	V	Y	N	D	Q	F	K	K	W	D	L	G	D	I	I	G	A	R	G	T	L	F	K	T	Q	T	G	E	L	S	I	H	C	T	E	L	R	L	L	T	K	A	L	R	P	L	P	D	K	F	H	G	L	Q	D	Q	E	V	R	Y	R	Q	R	Y	L
Query Conservation
Alig confidence																			.																																															.	.	.	.	.
Template Conservation																			.																																															.	.	.	.	.
Template Sequence		G	Q	I	Q	I	Y	V	R	Q	D	D	V	G	E	Q	Q	Y	.	E	L	F	K	I	S	D	L	G	D	I	V	G	V	R	G	T	M	F	K	T	K	V	G	E	L	S	I	K	V	S	S	Y	E	F	L	T	K	A	L	R	P	L	P	E	K	.	.	.	.	.	D	I	E	Q	R	Y	R	Q	R	Y	L
Template Known Secondary structure																			.								T	T													T	T																	S	S						.	.	.	.	.		T	T					T
Template Predicted Secondary structure																			.																																															.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	I	A	N	D	K	S	R	Q	T	F	V	V	R	S	K	I	L	A	A	I	R	Q	F	M	V	A	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	I	M	N	P	E	S	K	K	T	F	I	T	R	S	L	I	I	Q	S	M	R	R	Y	L	D	S	H	G	Y	L	E	V	E	T	P	M	M	H	A	V	A	G	G	A	A	A	R	P	F	I	T	H	H	N	A	L	D	M	T	L	Y	M	R	I	A	I	E	L	H	L	K	R	L	I	V	G	G	L
Template Known Secondary structure																														T	T								S			S	S			S	S	S									T	T	T	T							S		S										T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	V	F	E	I	N	R	N	F	R	N	E	G	I	S	V	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	Y	G	E	H	V	F	D	F	G	K	P	F	E	K	L	T	M	R	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	V	Y	E	I	G	R	V	F	R	N	E	G	I	S	T	R	H	N	P	E	F	T	M	L	E	L	Y	E	A	Y	A	D	F	R	D	I	M	K	L	T	E	N	L	I	A	H	I	A	T	E	V	L	G	T	T	K	I	Q	Y	G	E	H	L	V	D	L	T	P	E	W	R	R	L	H	M	V	D	A
Template Known Secondary structure																	B	T	T	B		S											T																							S		S					T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A	L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	A	R	R	N	D	V	N	P	E	I	T	D
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		I	K	E	Y	V	G	.	V	D	F	W	R	Q	M	S	D	E	E	A	R	E	L	A	K	E	H	G	V	E	V	A	P	H	M	T	F	G	H	I	V	N	E	F	F	E	Q	K	V	E	D	K	L	I	Q	P	T	F	I	Y	G	H	P	V	E	I	S	P	L	A	K	K	N	P	D	D	P	R	F	T	D
Template Known Secondary structure								.				S	S															T					T	T															T	G	G	G			S								B	G	G	G		T	T	B		B		S	S		T	T	B	B	S
Template Predicted Secondary structure								.
Template SS confidence
		323	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P	T	A	G	L	G	I	G	I	D	R	M	I	M	L	F	T	N	S	H	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	E	L	F	I	V	G	R	E	H	A	N	A	F	T	E	L	N	D	P	I	D	Q	R	Q	R	F	E	E	Q	L	K	E	R	E	Q	G	N	D	E	A	H	E	M	D	E	D	F	L	E	A	L	E	Y	G	M	P	P	T	G	G	L	G	I	G	V	D	R	L	V	M	L	L	T	N	S	P	S	I
Template Known Secondary structure								T	T									B																				T	T		T	T														T				S															T	T	T		S	S	G
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		493	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	V	I	L	F	P	A	M	R	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	V	L	L	F	P	Q	M	R	H
Template Known Secondary structure		G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.