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Job DescriptionP0A8N5
Confidence100.00%DateThu Jan 5 11:08:20 GMT 2012
Rank2Aligned Residues480
% Identity45%Templatec3bjuB_
PDB info PDB header:ligaseChain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase
Resolution2.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.... .....40.........50.........60.........70.........80 .........90.
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Query Sequence  DFNDELRNRREKLAALRQQGV. AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIM. GKASFVTLQDV
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Template Sequence  DPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGD. HLTDITLKVAGRIHAKRASGGKLIFYDLRGE
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TT

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STT

TT
.B
TT

SSSST
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   72.......80.........90.........100.........110......... 120.........130.........140.........150
 
   92.......100 .........110.........120.........130.........140.........150.........160.........170
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Query Sequence  GGRIQLYVA. RDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQR
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Template Sequence  GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPK. . . . . . . . ETRYRQR
Template Known Secondary structure  TTTTSS


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   151........160.........170.........180.........190.........200.........210..... ....220..
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  YLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVG
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Template Sequence  YLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG
Template Known Secondary structure 
TT




SSS

SSSS


TTTT
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   231........240.........250.........260.........270.........280.........290.........300.........310
 
   251........260.........270.........280.........290.........300.........310... ......320...
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Query Sequence  GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY. . . . . . . GEHVFDFGKP
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Template Sequence  GIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPP
Template Known Secondary structure  T






BTTB
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   311........320.........330.........340.........350.........360.........370.........380.........390
 
   324.....330......... 340.........350.........360.........370.........380.........390........
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Query Sequence  FEKLTMREAIKKYRPE. . . . . TDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVS
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Template Sequence  FRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMS
Template Known Secondary structure 
TS



GGGTTSTT



S


TGGG

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BGGG
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   391........400.........410.........420.........430.........440.........450.........460.........470
 
   399400.........410.........420.........430.........440.........450.........460.........470........
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Query Sequence  PLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIG
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Template Sequence  PLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMG
Template Known Secondary structure  TTB
B
SSSTTBBSTTB


TT
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   471........480.........490.........500.........510.........520.........530.........540.........550
 
   479480.........490.........500..
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Query Sequence  IDRMIMLFTNSHTIRDVILFPAMR
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Template Sequence  IDRVAMFLTDSNNIKEVLLFPAMK
Template Known Secondary structure  TT
SSGGGGSSS



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   551........560.........570....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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