Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8N5
Confidence32.87%DateThu Jan 5 11:08:20 GMT 2012
Rank149Aligned Residues67
% Identity15%Templatec2c35F_
PDB info PDB header:polymeraseChain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6970.........80.........90.........100....... ..110.........120.........130......
Predicted Secondary structure 












............










Query SS confidence 






































. . . . . . . . . . . .




























Query Sequence  SVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEG. . . . . . . . . . . . VYNDQFKKWDLGDIIGARGTLFKTQTGEL
Query Conservation   
 
 
   
  


 

 


  
 


          ............        
  
  
 
 
 
     

 
Alig confidence 












..




....














............




























Template Conservation     
 
  
   
..
 
 
....
     
    
                          

 

  
  
      
Template Sequence  VVDAVVTQVNKVG. . LFTEI. . . . GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDI
Template Known Secondary structure  TT......TTGGGS
SS

SSSSS

TTSS

TT
TT
Template Predicted Secondary structure 



......
























Template SS confidence 















































































   84.....90...... ...100. ........110.........120.........130.........140.........150.......
 
   137..140.
Predicted Secondary structure 
Query SS confidence 




Query Sequence  SIHCT
Query Conservation 

   
Alig confidence 




Template Conservation    


Template Sequence  FAIGS
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 




   158.160..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions