Job Description P0A8N5 Confidence 95.59% Date Thu Jan 5 11:08:20 GMT 2012 Rank 105 Aligned Residues 214 % Identity 22% Template c1yfsB_ PDB info PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine Resolution 2.08 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence		S	K	I	L	A	A	I	R	Q	F	M	V	A	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	.	.	.	.	G	F	E	R	V	F	E	I	N	R	N	F	R
Query Conservation																																																																	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	E	I	R	E	L	F	L	S	F	F	E	K	K	G	H	T	R	V	K	S	A	P	L	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	D	P	T	L	L	F	V	N	A	G	M	V	P	F	K	N	V	F	L	G	L	E	K	R	P	Y	K	R	A	T	S	C	Q	K	C	L	R
Template Known Secondary structure															T	T									S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		T	T		S	S			S	T	T	G	G	G						S	S	S			S		S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
											264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	N	E	G	I	S	V	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	Y	G	E	H	V	F	D	F	G	K	P	F	E	K	L	T	M	R	E	A	I	K
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																.									.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.									.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	G	K	H	N	D	L	E	Q	V	G	Y	T	S	R	H	H	T	F	F	E	M	L	.	G	N	F	S	F	G	D	Y	.	.	.	.	.	F	K	K	E	A	I	E	Y	A	W	E	F	V	T	E	V	L	K	L	P	K	E	K	L	Y	V	S	V	Y	K	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T				G	G	G	T	T	T	S	S	S			S						.						S	S		.	.	.	.	.															T	T	S				G	G	G							T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.									.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A	L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	A	R	R	N	D	V	N	P	E	I	T	D	R	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	D	D	E	E	A	Y	R	I	W	N	E	H	I	G	I	P	S	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	W	R	L	G	E	E	D	N	F	W	Q	M	.	.	G	D	V	G	P	C	G	P	S	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T										T	T	T				G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	.	.	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
													132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150																										.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.
		415	.	.	.											.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	F	I	.	.	.	.	.	.	.	.	.	.	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P	T	A	G	L	G	I	G	I	D	R	M	I	M
Query Conservation						.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.			.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.			.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	Y	V	D	R	G	E	E	Y	E	G	D	E	R	Y	L	E	I	W	N	L	.	.	.	.	.	.	.	.	.	.	.	.	V	F	.	M	Q	Y	N	R	D	E	N	G	V	L	T	P	L	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	I	D	T	G	M	G	L	E	R	I	A	S
Template Known Secondary structure									T	T	S													.	.	.	.	.	.	.	.	.	.	.	.			.							T	T									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.			.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.													.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.														.	.	.	.	.	.	220	.	.	.	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	T	N	S	H	T	I	R	D	V	I	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	Q	G	K	N	S	N	F	E	I	D	I	I
Template Known Secondary structure				T	T		S	S	G	G	G	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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