Job Description P0A8N5 Confidence 100.00% Date Thu Jan 5 11:08:20 GMT 2012 Rank 10 Aligned Residues 415 % Identity 25% Template c1x55A_ PDB info PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue Resolution 1.80 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	H	T	S	D	Q	L	H	E	E	F	D	A	K	D	N	Q	E	L	E	S	L	N	I	E	V	S	V	A	G	R	M	M	T	R	R	I	M	G	K	A	S	F	V	T	L	Q	D	V	G	G	R	I	Q	L	Y	V	A	R	D	S	L	P	E	G	V	Y	N	D	Q	F	K	K	W	D	L	G	D	I
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.																																																	.
Template Conservation												.	.	.	.	.	.	.	.	.	.																																																	.
Template Sequence		E	K	V	Y	C	Q	E	V	K	P	.	.	.	.	.	.	.	.	.	.	E	L	D	G	K	K	V	R	L	A	G	W	V	Y	T	N	M	R	V	G	K	K	I	F	L	W	I	R	D	S	T	G	I	V	Q	A	V	V	A	K	N	V	V	G	E	E	T	F	.	E	K	A	K	K	L	G	R	E	S	S
Template Known Secondary structure						G	G	G			G	.	.	.	.	.	.	.	.	.	.	G	G	T	T																T	T									T	T																		.					T			T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.											.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.
		122	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		I	G	A	R	G	T	L	F	K	T	Q	T	.	.	G	E	L	S	I	H	C	T	E	L	R	L	L	T	K	A	L	R	P	L	P	D	K	F	H	G	L	Q	D	Q	E	V	R	Y	R	Q	R	Y	L	D	L	I	A	N	D	K	S	R	Q	T	F	V	V	R	S	K	I	L	A	A	I	R	Q	F	M	V
Query Conservation														.	.
Alig confidence														.	.																																										.
Template Conservation																																																									.
Template Sequence		V	I	V	E	G	I	V	K	A	D	E	R	A	P	G	G	A	E	V	H	V	E	K	L	E	V	I	Q	A	V	S	E	F	P	I	P	E	N	P	E	Q	A	S	P	E	L	L	L	D	Y	R	H	L	H	I	.	R	T	P	K	A	S	A	I	M	K	V	K	E	T	L	I	M	A	A	R	E	W	L	L
Template Known Secondary structure												T	T	S	G	G	G															S			S	S		S	S	G	G	G	S								T					T	.	T	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		A	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E	R	V	F	E	I	N	R	N	F	R	N	E	G	I	S	V	.	R	H	N	P	E	F	T	M	M
Query Conservation																																																																								.
Alig confidence																										.	.																									.																				.
Template Conservation																										.	.																									.
Template Sequence		K	D	G	W	H	E	V	F	P	P	I	L	V	T	G	A	V	E	G	G	A	T	L	F	.	.	K	L	K	Y	F	D	K	Y	A	Y	L	S	Q	S	A	Q	L	Y	L	E	A	A	I	F	.	G	L	E	K	V	W	S	L	T	P	S	F	R	A	E	K	S	R	T	R	R	H	L	T	E	F	W	H	L
Template Known Secondary structure			T	T								S			S			S	S		G	G	G			.	.					T	T							S		S										.			S														S			T	T			S
Template Predicted Secondary structure																										.	.																									.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.							.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		E	L	Y	M	A	Y	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	Y	G	E	H	V	F	.	.	.	.	.	.	D	F	G	K	P	F	E	K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K
Query Conservation																																										.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	E	A	A	W	M	D	L	W	D	I	M	K	V	E	E	E	L	V	S	Y	M	V	Q	R	T	L	E	L	R	K	K	E	I	E	M	F	R	D	D	L	T	T	L	K	N	T	E	P	P	F	P	R	I	S	Y	D	E	A	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T																															T	T		S							T			S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.																			.	.
Query SS confidence																																																		.																			.	.
Query Sequence		A	L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	.	A	R	R	N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	.	.	G	G	R	E	I	G	N	G	F	S	E
Query Conservation																																																		.																			.	.
Alig confidence		.											.	.	.	.																																		.																			.	.
Template Conservation		.											.	.	.	.
Template Sequence		.	I	L	Q	S	K	G	V	N	V	E	.	.	.	.	W	G	D	D	L	G	A	D	E	E	R	V	L	T	E	E	F	D	R	P	F	F	V	Y	G	Y	P	K	H	I	K	A	F	Y	M	K	E	D	P	N	D	P	R	K	V	L	A	S	D	M	L	A	P	E	G	Y	G	E	I	I	G	G	S	Q	R
Template Known Secondary structure		.					T	T					.	.	.	.	T	T												G	G	G		S	S								B	G	G	G	S		T	T	B		B		S	S		T	T	B	B	S							T	T	T	T									B
Template Predicted Secondary structure		.											.	.	.	.
Template SS confidence
			290	.	.	.	.	.	.	.	.	.					300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P	T	A	G	L	G	I	G	I	D	R	M	I	M	L	F	T	N	S	H	T	I	R	D	V	I	L	F	P	A	M	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.
Template Sequence		E	D	D	Y	D	K	L	L	N	R	I	L	E	E	G	M	D	P	K	D	.	.	.	.	.	.	.	.	Y	E	W	Y	L	D	L	R	R	Y	G	S	V	P	H	S	G	F	G	L	G	V	E	R	L	V	A	W	V	L	K	L	D	H	I	R	W	A	A	L	F	P	R	T	P
Template Known Secondary structure															T	T			G	G	G	.	.	.	.	.	.	.	.	G						T	T	T	S	S																			T	T		S		G	G	G	G	S	S	S			B	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.									.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.