Job Description P0A8N5 Confidence 100.00% Date Thu Jan 5 11:08:20 GMT 2012 Rank 8 Aligned Residues 415 % Identity 27% Template c1wydB_ PDB info PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii Resolution 2.30 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	H	T	S	D	Q	L	H	E	E	F	D	A	K	D	N	Q	E	L	E	S	L	N	I	E	V	S	V	A	G	R	M	M	T	R	R	I	M	G	K	A	S	F	V	T	L	Q	D	V	G	G	R	I	Q	L	Y	V	A	R	D	S	L	P	E	G	V	Y	N	D	Q	F	K	K	W	D	L	G	D	I
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Sequence		R	S	H	F	I	A	D	V	T	P	E	Y	D	.	.	.	.	.	.	.	.	.	.	G	K	E	V	I	W	A	G	W	V	H	L	L	R	D	L	G	G	K	K	F	I	I	L	R	D	K	T	G	L	G	Q	V	V	V	D	K	N	S	S	A	.	.	.	.	F	G	I	S	Q	E	L	T	Q	E	S	V
Template Known Secondary structure			S			G	G	G			G	G	G	T	.	.	.	.	.	.	.	.	.	.	T																T	T									T	T									T	T	S	T	T	.	.	.	.					T	T			T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.											.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																									.	.
Query SS confidence																.	.																									.	.
Query Sequence		I	G	A	R	G	T	L	F	K	T	Q	T	G	E	.	.	L	S	I	H	C	T	E	L	R	L	L	T	K	A	L	R	P	L	P	D	K	F	H	G	.	.	L	Q	D	Q	E	V	R	Y	R	Q	R	Y	L	D	L	I	A	N	D	K	S	R	Q	T	F	V	V	R	S	K	I	L	A	A	I	R	Q	F
Query Conservation																.	.																									.	.
Alig confidence																.	.																									.	.																.
Template Conservation																																																											.
Template Sequence		I	Q	V	R	G	I	V	K	A	D	K	R	A	P	R	G	I	E	L	H	A	E	E	I	T	L	L	S	K	A	K	A	P	L	P	L	D	V	S	G	K	V	K	A	D	I	D	T	R	L	R	E	R	V	L	D	L	.	R	R	Q	E	M	Q	A	V	I	K	I	Q	S	L	A	L	K	A	F	R	E	T
Template Known Secondary structure												S	S	S	G	G	G																S	S		S	S		T	T	S				S							T	T						.	T	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		M	V	A	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E	R	V	F	E	I	N	R	N	F	R	N	E	G	I	S	V	.	R	H	N	P	E	F	T
Query Conservation																																																																										.
Alig confidence																												.	.																					.																								.
Template Conservation																												.	.																					.
Template Sequence		L	Y	K	E	G	F	I	E	I	F	T	P	K	I	I	A	S	A	T	E	G	G	A	Q	L	F	.	.	P	V	I	Y	F	G	K	E	A	F	L	A	Q	S	P	Q	L	Y	K	E	.	L	M	A	G	V	V	E	R	V	F	E	V	A	P	A	W	R	A	E	E	S	D	T	P	F	H	L	A	E	F	I
Template Known Secondary structure					T	T								S			S	S		S	S	T	T					.	.					T	T							S		S						.							S																S	S	S			S
Template Predicted Secondary structure																												.	.																					.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		M	M	E	L	Y	M	A	Y	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	.	.	.	Y	G	E	H	V	F	D	F	G	K	P	F	E	K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	M	D	V	E	M	A	F	A	D	Y	N	D	V	M	Q	L	L	E	K	I	L	H	N	I	V	K	T	I	K	E	E	G	K	E	E	L	K	I	L	N	Y	E	P	P	E	V	K	I	P	I	K	R	L	K	Y	T	E	A	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S																									S								T								S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	.	A	R	R	N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E	L	N	D
Query Conservation																																																	.
Alig confidence																															.	.	.																.
Template Conservation																															.	.	.
Template Sequence		I	L	R	S	K	G	Y	N	I	K	F	G	D	D	I	G	T	P	E	L	R	I	L	N	E	E	L	K	E	.	.	.	D	L	Y	F	I	V	D	W	P	S	D	A	R	P	F	Y	T	K	S	K	S	E	N	P	E	L	S	E	S	F	D	L	I	Y	K	F	L	E	I	V	S	G	S	T	R	N	H	K
Template Known Secondary structure						T	T					T	T																S		.	.	.	S								B	G	G	G	S		T	T	B		B		S	S		T	T	B	B	S							T	T									B			S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P	T	A	G	L	G	I	G	I	D	R	M	I	M	L	F	T	N	S	H	T	I	R	D	V	I	L	F	P	A	M	R	P	Q
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		R	E	V	L	E	E	A	L	K	K	K	G	L	K	P	E	S	.	.	.	.	.	.	.	.	F	E	F	F	L	K	W	F	D	Y	G	M	P	P	H	A	G	F	G	M	G	L	A	R	L	M	V	M	L	T	G	I	Q	S	V	K	E	I	V	P	F	P	R	D	K	K	R
Template Known Secondary structure											T	T	T			G	G	G	.	.	.	.	.	.	.	.	G					G	G	G	G	S																									T	T	T	T	S	S	S			B	T	T	B
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.									380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.