Job Description P0A8N5 Confidence 100.00% Date Thu Jan 5 11:08:20 GMT 2012 Rank 13 Aligned Residues 350 % Identity 28% Template c1n9wA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus Resolution 2.30 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	A	K	D	N	Q	E	L	E	S	L	N	I	E	V	S	V	A	G	R	M	M	T	R	R	I	M	G	K	A	S	F	V	T	L	Q	D	V	G	G	R	I	Q	L	Y	V	A	R	D	S	L	P	E	G	V	Y	N	D	Q	F	K	K	W	D	L	G	D	I	I	G	A	R	G	T	L	F	K	T	Q
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	V	L	V	R	D	L	K	A	H	V	G	Q	E	V	E	L	L	G	F	L	H	W	R	R	D	L	G	R	I	Q	F	L	L	L	R	D	R	S	G	V	V	Q	V	V	T	G	G	L	.	.	.	.	.	.	.	.	.	.	.	K	L	P	L	P	E	S	A	L	R	V	R	G	L	V	V	E	N	A
Template Known Secondary structure			B			G	G	G	G	G	G		T	T	S															S	S									T	T									S		.	.	.	.	.	.	.	.	.	.	.					T	T													T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50												.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		133			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		T	.	.	G	E	L	S	I	H	C	T	E	L	R	L	L	T	K	A	L	R	P	L	P	D	K	F	H	G	L	Q	D	Q	E	V	R	Y	R	Q	R	Y	L	D	L	I	A	N	D	K	S	R	Q	T	F	V	V	R	S	K	I	L	A	A	I	R	Q	F	M	V	A	R	G	F	M	E	V	E	T	P	M
Query Conservation			.	.
Alig confidence			.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.																																			.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.							.																																			.
Template Sequence		K	A	P	G	G	L	E	V	Q	A	K	E	V	E	V	L	S	P	A	L	E	P	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	Y	V	T	L	.	R	G	E	K	A	R	A	P	L	K	V	Q	A	A	L	V	R	G	F	R	R	Y	L	D	R	Q	D	F	T	E	I	F	T	P	.
Template Known Secondary structure		T	S	T	T	S																S				.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	.	T	S																								T	T								.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.							.																																			.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.															.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		M	Q	V	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E	R	V	F	E	I	N	R	N	F	R	N	E	G	I	S	V	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	.	A	D	Y	H	D
Query Conservation																																																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.																.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	L	Y	K	Q	.	I	M	V	G	V	F	E	R	V	Y	E	V	A	P	V	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	L	S	L	D	V	E	M	G	F	I	A	D	E	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.							S									.	.	.	.	.	.	.	.	.	.	.	.											S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															179	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.													200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	.	.	.	Y	G	E	H	V	F	D	F	G	K	P	F	E	K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A	L	A	E	S	I	G	I	T	V	E	K	S	W
Query Conservation																									.	.	.
Alig confidence																									.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	R	L	E	E	A	L	L	A	E	M	L	E	E	A	L	N	T	A	G	D	E	I	R	L	L	G	A	T	W	P	S	F	P	Q	D	I	P	R	L	T	H	A	E	A	K	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	E	E	L	G	Y	P	V	G	Q	D	L
Template Known Secondary structure																					S							T	T							S	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	S						S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.																			.	280	.	.	.	.	.	.	.	.	.	290	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	A	R	R	N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A
Query Conservation
Alig confidence		.																																					.
Template Conservation		.																																					.
Template Sequence		.	S	E	E	A	E	R	L	L	G	E	Y	A	K	E	R	W	G	S	D	W	L	F	V	T	R	Y	P	R	S	V	R	P	F	Y	T	Y	.	P	E	E	D	G	T	T	R	S	F	D	L	L	F	R	G	L	E	I	T	S	G	G	Q	R	I	H	R	Y	E	E	L	L	E	S	L	K	A	K	G	M	D
Template Known Secondary structure		.																T			S								B	G	G	G	S		T	T	B		.	B		T	T	S	B	B	S							T	T									B														T	T
Template Predicted Secondary structure		.																																					.
Template SS confidence
			292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P	T	A	G	L	G	I	G	I	D	R	M	I	M	L	F	T	N	S	H	T	I	R	D	V	I	L	F	P
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.
Template Sequence		P	E	A	.	.	.	.	.	.	.	.	F	H	G	Y	L	E	V	F	K	Y	G	M	P	P	H	G	G	F	A	I	G	A	E	R	L	T	Q	K	L	L	G	L	P	N	V	R	Y	A	R	A	F	P
Template Known Secondary structure		G	G	G	.	.	.	.	.	.	.	.	G					G	G	G	G	S				S																T	T		S	S	G	G	G	G		S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.
Template SS confidence
		370	.	.									.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.