Job Description P0A8N5 Confidence 100.00% Date Thu Jan 5 11:08:20 GMT 2012 Rank 6 Aligned Residues 421 % Identity 26% Template c1b8aB_ PDB info PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase Resolution 1.90 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	D	H	T	S	D	Q	L	H	E	E	F	D	A	K	D	N	Q	E	L	E	S	L	N	I	E	V	S	V	A	G	R	M	M	T	R	R	I	M	G	K	A	S	F	V	T	L	Q	D	V	G	G	R	I	Q	L	Y	V	A	R	D	S	L	P	E	G	V	Y	N	D	Q	F	K	K	W	D	L	G	D
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.																																																	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																																																	.
Template Sequence		Y	R	T	H	Y	S	S	E	I	T	E	.	.	.	.	.	.	.	.	.	.	E	L	N	G	Q	K	V	K	V	A	G	W	V	W	E	V	K	D	L	G	G	I	K	F	L	W	I	R	D	R	D	G	I	V	Q	I	T	A	P	K	K	K	V	D	P	E	L	F	.	K	L	I	P	K	L	R	S	E	D
Template Known Secondary structure				S			G	G	G			G	.	.	.	.	.	.	.	.	.	.	G	G	T	T																S	S									T	T									G	G	G	S						.			G	G	G			T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		1002	.	.	.	.	.	.	.	1010	.	.											.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060		.	.	.	.	.	.	.	.	.	1070
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																		.	.																								.	.
Query SS confidence																		.	.																								.	.
Query Sequence		I	I	G	A	R	G	T	L	F	K	T	Q	T	G	E	L	.	.	S	I	H	C	T	E	L	R	L	L	T	K	A	L	R	P	L	P	D	K	F	H	G	.	.	L	Q	D	Q	E	V	R	Y	R	Q	R	Y	L	D	L	I	A	N	D	K	S	R	Q	T	F	V	V	R	S	K	I	L	A	A	I	R	Q
Query Conservation																		.	.																								.	.
Alig confidence																		.	.																								.	.																.
Template Conservation																																																												.
Template Sequence		V	V	A	V	E	G	V	V	N	F	T	P	K	A	K	L	G	F	E	I	L	P	E	K	I	V	V	L	N	R	A	E	T	P	L	P	L	D	P	T	G	K	V	K	A	E	L	D	T	R	L	N	N	R	F	M	D	L	.	R	R	P	E	V	M	A	I	F	K	I	R	S	S	V	F	K	A	V	R	D
Template Known Secondary structure													T	T	S	T	T	S																S	S		S	S		T	T	S	S	S										T					T	.	T	S
Template Predicted Secondary structure																																																												.
Template SS confidence
		1071	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.		.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		F	M	V	A	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E	R	V	F	E	I	N	R	N	F	R	N	E	G	I	S	V	.	R	H	N	P	E	F
Query Conservation																																																																											.
Alig confidence																													.	.																																													.
Template Conservation																													.	.
Template Sequence		F	F	H	E	N	G	F	I	E	I	H	T	P	K	I	I	A	T	A	T	E	G	G	T	E	L	F	.	.	P	M	K	Y	F	E	E	D	A	F	L	A	E	S	P	Q	L	Y	K	E	I	M	M	A	S	G	L	D	R	V	Y	E	I	A	P	I	F	R	A	E	E	H	N	T	T	R	H	L	N	E	A
Template Known Secondary structure						T	T								S							S	S			S			.	.					T	T							S		S							G	G	G	T	T															S	S			T	T			S
Template Predicted Secondary structure																													.	.
Template SS confidence
		1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.			.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure											.																																							.	.	.
Query SS confidence											.																																							.	.	.
Query Sequence		T	M	M	E	L	Y	M	A	Y	.	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	Y	G	E	H	V	F	D	F	G	K	.	.	.	P	F	E	K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A
Query Conservation											.																																							.	.	.
Alig confidence											.																																							.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	S	I	D	S	E	M	A	F	I	E	D	E	E	E	V	M	S	F	L	E	R	L	V	A	H	A	I	N	Y	V	R	E	H	N	A	K	E	L	D	I	L	N	F	E	L	E	E	P	K	L	P	F	P	R	V	S	Y	D	K	A	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S		S	S																														T	T								S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1228	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.																										.
Query SS confidence																											.																										.
Query Sequence		K	A	L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	.	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	A	.	R	R	N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E
Query Conservation																											.																										.
Alig confidence		.	.																								.																										.
Template Conservation		.	.
Template Sequence		.	.	I	L	G	D	L	G	K	E	I	P	W	G	E	D	I	D	T	E	G	E	R	L	L	G	K	Y	M	M	E	N	E	N	A	P	L	Y	F	L	Y	Q	Y	P	S	E	A	K	P	F	Y	I	M	K	Y	D	N	K	P	E	I	C	R	A	F	D	L	E	Y	R	G	V	E	I	S	S	G	G	Q	R
Template Known Secondary structure		.	.					T	T					T	T	S																					S						S		B	G	G	G	S		T	T	B				T	T						S							T	T									B
Template Predicted Secondary structure		.	.
Template SS confidence
				1291	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P	T	A	G	L	G	I	G	I	D	R	M	I	M	L	F	T	N	S	H	T	I	R	D	V	I	L	F	P	A	M	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.
Template Sequence		E	H	R	H	D	I	L	V	E	Q	I	K	E	K	G	L	N	P	E	S	.	.	.	.	.	.	.	.	F	E	F	Y	L	K	A	F	R	Y	G	M	P	P	H	G	G	F	G	L	G	A	E	R	L	I	K	Q	M	L	D	L	P	N	I	R	E	V	I	L	F	P	R	D	R
Template Known Secondary structure															T	T			G	G	G	.	.	.	.	.	.	.	.	G					G	G	G	S	S																				T	T		S		G	G	G	S	S	S	S				S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.
Template SS confidence
		1369	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.									.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.