Job Description P0A8N5 Confidence 100.00% Date Thu Jan 5 11:08:20 GMT 2012 Rank 7 Aligned Residues 430 % Identity 25% Template c1asyA_ PDB info PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp Resolution 2.90 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																												.																								.	.
Query SS confidence																																												.																								.	.
Query Sequence		R	R	D	H	T	S	D	Q	L	H	E	E	F	D	A	K	D	N	Q	E	L	E	S	L	N	I	E	V	S	V	A	G	R	M	M	T	R	R	I	M	G	K	.	A	S	F	V	T	L	Q	D	V	G	G	R	I	Q	L	Y	V	A	R	D	S	L	P	.	.	E	G	V	Y	N	D	Q	F	K	K	W	D
Query Conservation																																												.																								.	.
Alig confidence																					.	.																						.																								.	.
Template Conservation																					.	.
Template Sequence		R	D	S	D	R	T	G	Q	K	R	V	K	F	V	D	L	D	E	A	.	.	K	D	S	D	K	E	V	L	F	R	A	R	V	H	N	T	R	Q	Q	G	A	T	L	A	F	L	T	L	R	Q	Q	A	S	L	I	Q	G	L	V	K	A	N	K	E	G	T	I	S	K	N	M	V	K	W	A	G	S	L	N
Template Known Secondary structure			T	T	T									G	G	G			S	S	.	.	S	S	S	S																	T	T								S	S	S											T	T	S	S	S										T
Template Predicted Secondary structure																					.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.															.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	D	I	I	G	A	R	G	T	L	F	K	T	Q	T	.	.	.	.	.	.	.	G	E	L	S	I	H	C	T	E	L	R	L	L	T	K	A	L	R	P	L	P	D	K	F	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	Q	D	Q	E	V	R	Y	R	Q	R	Y	L	D	L	I	A
Query Conservation																		.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																																																.
Template Sequence		L	E	S	I	V	L	V	R	G	I	V	K	K	V	D	E	P	I	K	S	A	T	V	Q	N	L	E	I	H	I	T	K	I	Y	T	I	S	E	T	P	E	A	L	P	I	L	L	E	D	A	S	R	S	E	A	E	A	E	A	A	G	L	P	V	V	N	L	D	T	R	L	D	Y	R	V	I	D	L	.	R
Template Known Secondary structure		T	T													S	S			S	S		S	S	T	T																S			S	S							S							T	T	S												T					T	.	T
Template Predicted Secondary structure																																																																																.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	K	S	R	Q	T	F	V	V	R	S	K	I	L	A	A	I	R	Q	F	M	V	A	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E	R	V	F
Query Conservation
Alig confidence																																																	.	.
Template Conservation																																																	.	.
Template Sequence		T	V	T	N	Q	A	I	F	R	I	Q	A	G	V	C	E	L	F	R	E	Y	L	A	T	K	K	F	T	E	V	H	T	P	K	L	L	G	A	P	S	E	G	G	S	S	V	F	.	.	E	V	T	Y	F	K	G	K	A	Y	L	A	Q	S	P	Q	F	N	K	Q	Q	L	I	V	A	D	F	E	R	V	Y
Template Known Secondary structure		S	T	T																						T	T								S			S	S		S	T	T	T	T	S			.	.	B			B	T	T	B						S		S										T	T
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.										.	.	.	.
Predicted Secondary structure															.																		.																																				.	.	.	.	.	.	.	.	.
Query SS confidence															.																		.																																				.	.	.	.	.	.	.	.	.
Query Sequence		E	I	N	R	N	F	R	N	E	G	I	S	V	.	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	D	.	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	Y	G	E	H	V	F	D	F	G	.	.	.	.	.	.	.	.	.	K	P	F	E
Query Conservation															.																		.																																				.	.	.	.	.	.	.	.	.
Alig confidence															.																		.																																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	G	P	V	F	R	A	E	N	S	N	T	H	R	H	M	T	E	F	T	G	L	D	M	E	M	A	F	E	E	H	Y	H	E	V	L	D	T	L	S	E	L	F	V	F	I	F	S	E	L	P	K	R	F	A	H	E	I	E	L	V	R	K	Q	Y	P	V	E	E	F	K	L	P	K	D	G	K	M	V
Template Known Secondary structure										S					S	S			S	S											S	S		T																															T	T	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.
Predicted Secondary structure																																																															.															.
Query SS confidence																																																															.															.
Query Sequence		K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A	L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	.	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	.	A	R	R
Query Conservation																																																															.															.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.															.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	T	Y	K	E	G	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	R	A	A	G	K	E	I	G	D	F	E	D	L	S	T	E	N	E	K	F	L	G	K	L	V	R	D	K	Y	D	T	D	F	Y	I	L	D	K	F	P	L	E	I	R	P	F	Y	T	M	P
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T					S	S	S																					S								B	T	T	S	S		T	T	B		B
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.																				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P	T	A	G	L	G	I	G	I	D	R	M	I
Query Conservation
Alig confidence																																										.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.
Template Sequence		D	P	A	N	P	K	Y	S	N	S	Y	D	F	F	M	R	G	E	E	I	L	S	G	A	Q	R	I	H	D	H	A	L	L	Q	E	R	M	K	A	H	.	.	.	.	.	.	G	L	S	P	E	D	P	G	L	K	D	Y	C	D	G	F	S	Y	G	C	P	P	H	A	G	G	G	I	G	L	E	R	V	V
Template Known Secondary structure			S	S		T	T	B	B	S							T	T																							T	.	.	.	.	.	.	T			T	T	S									T	T	T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.							500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	F	T	N	S	H	T	I	R	D	V	I	L	F	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	F	Y	L	D	L	K	N	I	R	R	A	S	L	F	P	R
Template Known Secondary structure						T		S		G	G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550