Job Description P0A8N5 Confidence 99.68% Date Thu Jan 5 11:08:20 GMT 2012 Rank 44 Aligned Residues 280 % Identity 15% Template c1adyA_ PDB info PDB header:trna synthetase Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase in complex with histidyl-adenylate Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.					.	.	.	.
Query SS confidence																																	.	.	.	.	.	.					.	.	.	.
Query Sequence		F	V	V	R	S	K	I	L	A	A	I	R	Q	F	M	V	A	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	.	.	.	.	.	.	P	G	G	A	.	.	.	.	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E
Query Conservation																																	.	.	.	.	.	.					.	.	.	.
Alig confidence																																	.	.	.	.	.	.					.	.	.	.								.
Template Conservation																																																						.
Template Sequence		L	R	M	H	Q	R	I	V	A	T	A	R	K	V	L	E	A	A	G	A	L	E	L	V	T	P	I	F	E	E	T	Q	V	F	E	K	G	V	G	A	A	T	D	I	V	R	K	E	M	F	T	F	.	Q	D	R	G	G	R	S	L	T	L	R	P	E	G	T	A	A	M	V	R	A	Y	L	E	H	G	M
Template Known Secondary structure																			T	T								S													T	T	S											.			T	T	S							S		S											T	T	G
Template Predicted Secondary structure																																																						.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
									254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.														310	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	R	V	F	E	I	N	R	N	F	R	N	E	G	I	S	V	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	T	Y
Query Conservation		.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	W	P	Q	P	V	R	L	W	M	A	G	P	M	F	R	A	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	V	N	Y	E	A	L	G	S	E	N	P	I	L	D	A	E	A	V	V	L	L	Y	E	C	L	K	E	L	G	L	R	R	L	K	V	K	L	S	S	V	G	D	P	E	D	R	A	R	Y
Template Known Secondary structure		G	G	S	S	S	S													S			B	T	T	B		S											S																					T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	H	V	F	D	F	G	K	P	F	E	K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A	L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		N	A	Y	L	R	E	V	L	S	P	H	R	E	A	L	S	E	D	S	K	E	R	L	E	E	N	P	M	R	I	L	D	S	K	S	E	R	D	Q	A	L	L	K	E	L	G	V	R	P	M	L	D	F	L	G	E	E	A	R	A	H	L	K	E	V	E	R	H	L	E	R	L	S	V	P	Y	E	L	E	.
Template Known Secondary structure										G	G	G	G	G	G	S								T	T	S		G	G	G	G	T	T			S											T				G	G	G	G																			T	T							.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.					.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		P	A	E	V	S	P	L	A	R	R	N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	.	.	.	.	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L
Query Conservation																											.	.	.	.
Alig confidence		.	.	.	.	.	.																				.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	P	A	L	V	R	G	L	D	Y	Y	V	R	T	A	F	E	V	H	H	E	E	I	G	A	Q	S	A	L	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	D	G	L	S	E	L	L	G	G	P	R
Template Known Secondary structure		.	.	.	.	.	.	S					S		T	T			S								S	S	S	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T					T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.																														.	.	.	290	.	.	.	.	.	.	.	.	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	T	A	G	L	G	I	G	I	D	R	M	I	M	L	F	T	N	S	H	T	I	R	D	V	I	L	F	P	A	M	R	P	Q	K
Query Conservation
Alig confidence																			.	.	.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		V	P	G	V	G	F	A	F	G	V	E	R	V	A	L	A	L	.	.	.	.	.	E	A	E	G	F	G	L	P	E	E	K	G	P	D
Template Known Secondary structure																			.	.	.	.	.			T	T										S
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.						.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions