Job Description P17854 Confidence 97.03% Date Thu Jan 5 11:36:21 GMT 2012 Rank 54 Aligned Residues 200 % Identity 16% Template c3ilvA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii Resolution 1.79 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	L	D	L	N	A	L	N	E	L	P	K	V	D	R	I	L	A	L	A	E	T	N	A	E	L	E	K	L	D	A	E	G	R	V	A	W	A	L	D	N	L	P	G	E	Y	V	L	S	S	S	F	G	I	Q	A	A	V	S	L	H	L	V	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Q	R	N	D	R	L	S	F	K	N	V	N	L	I	Y	A	D	I	A	T	L	E	K	E	F	E	F	W	E	A	T	S	L	G	L	F	D	Y	X	R	K	S	R	S	K	G	F	V	L	S	L	S	G	G	A	D	S	S	A	C	A	I	X	V	A	E	X	I	R	K	G	L	K	E	L	G	L	T	A
Template Known Secondary structure							S	S		S	S	S																																T	T			S							S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
																														68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	P	D	I	P	V	I	L	T	D	T	G	Y	L	F	P	E	T	Y	R	F	I	D	E	L	T	D	K	L	K	L	N	L	K	V	Y	R	A	T	E	S	A	A	W	Q	E	A	R	Y	G	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	Q	K	S	N	X	E	T	L	F	D	L	P	A	L	Q	H	L	P	F	E	E	Q	A	K	K	I	T	A	V	F	L	T	T	A	Y	Q	S	T	R	N	S	G	D	E	T	Y	T	S	A	K	T	L	A	E	S	I	G	A	T	F	Y	N	W	S	V	D	E	E	I	E	Q	Y	K	A	T	I	E	N
Template Known Secondary structure							T		G	G	G			S	S		S	S		T	T	S																				T	T			S														T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
								120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	W	E	Q	G	V	E	G	I	E	K	Y	N	D	I	N	K	V	E	P	M	N	R	A	L	K	E	L	N	A	Q	T	W	F	A	G	L	R	R	E	Q	S	G	S	R	A	N	L	P	V	L	A	I	Q	R	G	V	F	K	V	L	P	I	I	D	W	D	N	R	T	I	Y	Q	Y
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																								.	.	.																	.
Template Conservation																																															.	.	.																	.
Template Sequence		V	I	E	R	P	L	T	W	E	K	D	D	I	T	L	Q	N	I	Q	A	R	G	R	A	P	I	I	W	X	L	T	N	V	K	Q	A	L	L	I	T	T	S	N	R	S	.	.	.	E	G	D	V	G	Y	A	T	X	D	G	D	T	A	G	G	.	I	A	P	I	A	G	V	D	K	D	F	I	R	S	W
Template Known Secondary structure			T	T	S				T	T	T												T	T												T				B							.	.	.				T	T		S		T	T	T	T	T		S	S	.	B	B	T	T	T	T	S
Template Predicted Secondary structure																																															.	.	.																	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.				.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		194	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	K	H	G	L	K	Y	H	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	W	A	E	K	N	R	N	Q	H
Template Known Secondary structure									S			G
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions