Job Description P17854 Confidence 48.69% Date Thu Jan 5 11:36:21 GMT 2012 Rank 63 Aligned Residues 67 % Identity 13% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		48	.	50	.	.	.	.		.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure									.								.	.
Query SS confidence									.								.	.
Query Sequence		Y	V	L	S	S	S	F	.	G	I	Q	A	A	V	S	.	.	L	H	L	V	N	Q	I	R	P	D	I	P	V	I	L	T	D	T	G	Y	L	F	P	E	T	Y	R	F	I	D	E	L	T	D	K	L	K	L	N	L	K	V	Y	R	A	T	E	S	A	A	W	Q	E	A	R
Query Conservation									.								.	.
Alig confidence									.								.	.																					.	.
Template Conservation																																							.	.
Template Sequence		F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	.	.	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R
Template Known Secondary structure							T	T	S	S															T	T										S	S		.	.															T								T	T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions