Email l.a.kelley@imperial.ac.uk Description P23485 Date Thu Jan 5 11:39:31 GMT 2012 Unique Job ID 5dc982932c7e4058

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2y9kG_ 98.2 14 PDB header:protein transport Chain: G: PDB Molecule:protein invg; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution 2 c3gr5A_ 97.9 9 PDB header:membrane protein Chain: A: PDB Molecule:escc; PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec) 3 c2y3mA_ 96.2 14 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein hofq; PDBTitle: structure of the extra-membranous domain of the secretin2 hofq from actinobacillus actinomycetemcomitans 4 c2a02A_ 96.1 14 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:ferric-pseudobactin 358 receptor; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter pupa from3 pseudomonas putida. 5 c3ezjA_ 96.1 10 PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein gspd; PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody 6 c3hugJ_ 95.7 12 PDB header:transcription/membrane protein Chain: J: PDB Molecule:probable conserved membrane protein; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 7 c3ossD_ 95.4 17 PDB header:protein transport Chain: D: PDB Molecule:type 2 secretion system, secretin gspd; PDBTitle: the crystal structure of enterotoxigenic escherichia coli gspc-gspd2 complex from the type ii secretion system 8 c2d1uA_ 94.9 10 PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli 9 c1zzvA_ 94.8 10 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli. 10 c3eo6B_ 86.1 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution 11 c3cddD_ 85.2 14 PDB header:structural protein Chain: D: PDB Molecule:prophage muso2, 43 kda tail protein; PDBTitle: crystal structure of prophage muso2, 43 kda tail protein from2 shewanella oneidensis 12 c3hqxA_ 85.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 13 d3cdda2 79.1 15 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 14 c2z2sD_ 78.7 8 PDB header:transcription Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr; PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr 15 d1uika1 74.2 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 16 d1uija1 71.0 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 17 c2eaaB_ 65.8 11 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 18 c3s7eB_ 64.5 12 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 19 d2bnma2 62.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 20 c2pfwB_ 61.2 7 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 21 c2cauA_ not modelled 56.9 10 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 22 d1yhfa1 not modelled 56.1 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 23 d1dgwa_ not modelled 56.0 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 24 c2iahA_ not modelled 54.7 14 PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. 25 d1fxza2 not modelled 51.7 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 26 c2bnoA_ not modelled 50.5 10 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 27 c1uijA_ not modelled 46.9 8 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 28 d2oyza1 not modelled 45.1 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 29 d1tkea1 not modelled 45.1 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 30 c2vz1A_ not modelled 42.2 10 PDB header:oxidoreductase Chain: A: PDB Molecule:galactose oxidase; PDBTitle: premat-galactose oxidase 31 c3es4B_ not modelled 40.3 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 32 c1wwtA_ not modelled 38.4 15 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 33 d1dw0a_ not modelled 38.0 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 34 d1yfua1 not modelled 36.7 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 35 d1y9qa2 not modelled 36.3 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 36 d2j73a1 not modelled 36.2 11 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 37 c2ozjB_ not modelled 34.8 12 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 38 c3myxA_ not modelled 32.8 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 39 c3kscD_ not modelled 30.7 13 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 40 d1j58a_ not modelled 30.4 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 41 d2phla1 not modelled 30.3 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 42 d1j1la_ not modelled 30.2 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 43 c3d37A_ not modelled 30.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tail protein, 43 kda; PDBTitle: the crystal structure of the tail protein from neisseria meningitidis2 mc58 44 c3bcwB_ not modelled 29.6 9 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 45 d1gu2a_ not modelled 28.7 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 46 d1v8qa_ not modelled 26.2 20 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 47 d1o5ua_ not modelled 25.9 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 48 d1od5a2 not modelled 25.8 7 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 49 c1wruA_ not modelled 25.6 13 PDB header:structural protein Chain: A: PDB Molecule:43 kda tail protein; PDBTitle: structure of central hub elucidated by x-ray analysis of gene product2 44; baseplate component of bacteriophage mu 50 d2pyta1 not modelled 25.2 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 51 d1wxma1 not modelled 25.1 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 52 c3o5cA_ not modelled 22.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis 53 d1nyra2 not modelled 22.6 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 54 d1wrua2 not modelled 21.8 13 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 55 c1fxzC_ not modelled 21.7 10 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 56 c3kglB_ not modelled 21.7 15 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 57 d1od5a1 not modelled 21.6 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 58 c2oziA_ not modelled 21.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 59 c2gu9B_ not modelled 21.3 6 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 60 d1vj2a_ not modelled 21.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 61 c3ehkC_ not modelled 21.2 8 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 62 d2oa4a1 not modelled 20.5 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:SPO1678-like 63 c3hq7A_ not modelled 19.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant 64 c2c1uB_ not modelled 19.7 15 PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form 65 c3qacA_ not modelled 19.7 10 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 66 c3c3vA_ not modelled 19.5 10 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 67 c3rnsA_ not modelled 19.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 68 d2f4pa1 not modelled 18.8 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 69 c2e9qA_ not modelled 18.7 8 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 70 c2vecA_ not modelled 18.7 10 PDB header:cytosolic protein Chain: A: PDB Molecule:pirin-like protein yhak; PDBTitle: the crystal structure of the protein yhak from escherichia2 coli 71 c2d5fB_ not modelled 18.6 14 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 72 d1eb7a2 not modelled 18.0 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 73 c3pdkB_ not modelled 17.9 20 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis 74 d1mpga2 not modelled 16.9 10 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:DNA repair glycosylase, N-terminal domain 75 c2i45C_ not modelled 16.4 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 76 d2p5zx2 not modelled 16.3 7 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 77 c1nmlA_ not modelled 15.9 8 PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0) 78 d1fxza1 not modelled 15.9 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 79 c2jrtA_ not modelled 15.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5 80 c1y9qA_ not modelled 15.1 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 81 d1dlja3 not modelled 15.1 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 82 c3fjsC_ not modelled 14.9 16 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 83 d1nmla2 not modelled 14.9 10 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 84 c3ht2A_ not modelled 14.8 11 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 85 c3fin0_ not modelled 14.3 20 PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit. 86 c3i4oA_ not modelled 13.9 9 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 87 d1iqca2 not modelled 13.5 10 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 88 c1cauB_ not modelled 13.3 8 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 89 d1pmia_ not modelled 13.3 6 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 90 c2qjvB_ not modelled 13.2 16 PDB header:isomerase Chain: B: PDB Molecule:uncharacterized iolb-like protein; PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution 91 d2bsya1 not modelled 12.8 8 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 92 d2zjrt1 not modelled 12.7 18 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 93 c1or7C_ not modelled 12.3 14 PDB header:transcription Chain: C: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea 94 d1or7c_ not modelled 12.3 14 Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA 95 c2opkC_ not modelled 12.2 17 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 96 c2vhdB_ not modelled 11.9 13 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form 97 d1ekxa1 not modelled 11.9 14 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 98 d1ml4a1 not modelled 11.1 19 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 99 d1otha1 not modelled 10.9 19 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase