Job Description P23331 Confidence 97.60% Date Thu Jan 5 11:39:23 GMT 2012 Rank 154 Aligned Residues 114 % Identity 14% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.												.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	L	Y	F	Y	Y	S	A	M	N	A	G	K	S	T	A	L	L	Q	S	S	Y	N	Y	Q	E	R	G	M	R	T	V	V	Y	T	A	E	I	D	.	D	R	F	G	A	G	K	V	S	S	R	I	G	.	.	.	.	.	.	.	.	.	.	.	L	S	S	P	A	K	L	F	N	Q	N	S	S	L	F
Query Conservation																																										.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R
Template Known Secondary structure		T									S	S	S																T	T								S	S															T	S	S						S	S		B				S		S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure											.																.	.	.
Query SS confidence											.																.	.	.
Query Sequence		D	E	I	R	A	E	H	E	Q	.	Q	A	I	H	C	V	L	V	D	E	C	Q	F	L	T	.	.	.	R	Q	Q	V	Y	E	L	S	E	V	V	D	Q	L	D	I	P	V	L	C	Y	G
Query Conservation											.																.	.	.
Alig confidence											.																.	.	.
Template Conservation
Template Sequence		S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	P	D	K	V	R	Y	V	F	L	S
Template Known Secondary structure								S	S												T	G	G	G	T	T	S														S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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