Job Description P23331 Confidence 96.78% Date Thu Jan 5 11:39:23 GMT 2012 Rank 301 Aligned Residues 69 % Identity 13% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	Y	Y	S	A	M	N	A	G	K	S	T	A	L	L	Q	S	S	Y	N	Y	Q	E	R	G	M	R	T	V	V	Y	T	A	E	I	D	D	R	F	G	A	G	K	V	S	S	R	I	G	L	S	S	P	A	K	L	F	N	Q	N	S	S	L	F	D	E	I	R	A	E	H	E	Q	Q	A	I	H	C	V
Query Conservation
Alig confidence																								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	N	S	T	F	F	S	V	S	S	S	D	L	V	S	K	W	M	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I
Template Known Secondary structure							S	T	T	S												T	T	.	.	.	T												T	T	T	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T										T	T	S	S
Template Predicted Secondary structure																								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	D	E	C	Q	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	D	Q	V	D	A	L
Template Known Secondary structure					S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions