Return to main results Retrieve Phyre Job Id

Job DescriptionP23331
Confidence98.88%DateThu Jan 5 11:39:23 GMT 2012
Rank16Aligned Residues130
% Identity18%Templatec3e1sA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40........ .50.........60.........70..
Predicted Secondary structure 














........









Query SS confidence 















































. . . . . . . .























Query Sequence  MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGK. . . . . . . . VSSRIGLSSPAKLFNQNSSLFDEI
Query Conservation 
 

 

 
 






 
          
  
 

 
  
 
     ........
 
  
             
    
Alig confidence 















































........

















......
Template Conservation        
 
 





  
  
   
      
   
 
  

  
       
 
 
  
             ......
Template Sequence  GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLE. . . . . .
Template Known Secondary structure  T
S

TTS
TT

SSTS
TTTTS
SSSS......
Template Predicted Secondary structure 






























......
Template SS confidence 















































































   352.......360.........370.........380.........390.........400.........410.........420.....
 
   73......80.........90.........100.........110.........120.........130.........140..
Predicted Secondary structure 
























Query SS confidence 





































































Query Sequence  RAEHEQQAIHCVLVDECQFLTRQQVYELSEVVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELK
Query Conservation           










    
  
  
 
  

 

  

  

    
     

  

 
  
 
Alig confidence  .....




























.


































Template Conservation  .....    
 







        

     .  






  

  
  
              
 
Template Sequence  . . . . . PAPYDLLIVDEVSMMGDALMLSLLAAVPP. GARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLT
Template Known Secondary structure  .....

S
S

GGG

TTS
T.T

TTS


SSS

S


Template Predicted Secondary structure  .....













.














Template SS confidence 





































































   426...430.........440.........450.... .....460.........470.........480.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions