Job Description P23331 Confidence 97.64% Date Thu Jan 5 11:39:23 GMT 2012 Rank 146 Aligned Residues 92 % Identity 18% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	Y	Y	S	A	M	N	A	G	K	S	T	A	L	L	Q	S	S	Y	N	Y	Q	E	R	G	M	R	T	V	V	Y	T	A	E	I	D	D	R	F	G	A	G	K	V	S	S	R	I	G	L	S	S	P	A	K	L	F	N	Q	N	S	S	L	F	D	E	I	R	A	E	H	E	Q	Q	A	I	H	C	V
Query Conservation
Alig confidence																								.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	.	.	.	G	A	F	F	F	L	I	N	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	M	S	K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I
Template Known Secondary structure						S		T	T	S														.	.	.	T								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S		T	T																T		S
Template Predicted Secondary structure																								.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.																	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		85	.	.	.	.	90	.	.												.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		L	V	D	E	C	Q	F	L	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	Q	V	Y	E	L	S	E	V	V	D	.	.	.	.	Q	L	D	I	P	V	L	C	Y	G
Query Conservation										.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	Q	R	A	H	V	I	V	M	A	A	T
Template Known Secondary structure					T	G	G	G	T				S	S				S															T	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions