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Job DescriptionP23331
Confidence98.37%DateThu Jan 5 11:39:23 GMT 2012
Rank59Aligned Residues140
% Identity16%Templatec3bgwD_
PDB info PDB header:replicationChain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
Resolution3.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.. .......60....
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Query Sequence  AQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSR. IGLSSPAKLFNQ. . . . . . . . . . . . . . . .
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Template Sequence  RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIG
Template Known Secondary structure  S

SSSSTT

SSS
S


TTGGGT

S
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   195....200.........210.........220.........230.........240.........250.........260.........270....
 
   65....70......... 80.........90.... .....100.........110 ...
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Query Sequence  . . . . . . . . . . . . . . . . NSSLFDEIRAEHEQQ. . AIHCVLVDECQFLTR. . . . . . . . . . . . QQVYELSEVVDQLDIP. VLC
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Template Sequence  EISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIAL
Template Known Secondary structure  TS


SS
BS
SS

SSSSB
S
SSS
T
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   275....280.........290.........300.........310.........320.........330.........340.........350....
 
   114.....120.... .....130.........140.
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Query Sequence  YGLRTDFRGEL. . . . . . . . FIGSQYLLAWSDKLVEL
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Template Sequence  SQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFL
Template Known Secondary structure 

GGGGGSS




GGG

S
S
S
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   355....360.........370.........380.........390
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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