Return to main results Retrieve Phyre Job Id

Job DescriptionP23331
Confidence98.46%DateThu Jan 5 11:39:23 GMT 2012
Rank47Aligned Residues129
% Identity9%Templatec2v3cC_
PDB info PDB header:signaling proteinChain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30...... ...40.........50.........60.........70........
Predicted Secondary structure 









...














Query SS confidence 


































. . .









































Query Sequence  AQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVY. . . TAEIDDRFGAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQ
Query Conservation   

 

 
 






 
          
  
 

... 
  
 
     
 
  
             
          
Alig confidence 


































...









































Template Conservation 
 

 


  
 




 



      
 

 

 


 
 

 


   
   



        

  
    
   
Template Sequence  QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF
Template Known Secondary structure 




SSSSTT



S


TTGGGSSSS



SSS

SSSTTTT
Template Predicted Secondary structure 
























Template SS confidence 















































































   100.........110.........120.........130.........140.........150.........160.........170.........
 
   7980.........90 .........100.........110.........120.........130
Predicted Secondary structure 






..














Query SS confidence 











. .







































Query Sequence  QAIHCVLVDECQ. . FLTRQQVYELSEVVDQLDIPVLCYGLRTDFRGELFIGSQY
Query Conservation     








..

    
  
  
 
  

 

  

  

    
     
Alig confidence 











..







































Template Conservation     









   
  
  

  
     
 
 





  

 
   
  
Template Sequence  KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKA
Template Known Secondary structure  SS
S


S
SSTTSSS

SGGGGGG
Template Predicted Secondary structure 




















Template SS confidence 





















































   180.........190.........200.........210.........220.........230...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions