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Job DescriptionP23331
Confidence96.99%DateThu Jan 5 11:39:23 GMT 2012
Rank265Aligned Residues130
% Identity17%Templatec2hydB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30..... ....40.....
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Query Sequence  AQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YTAEIDDRFG
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Template Sequence  GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE
Template Known Secondary structure  T

STTSSTTTTTSS

STTGGGS
T
SS



SSBGGG
SS

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   367..370.........380.........390.........400.........410.........420.........430.........440......
 
   46...50.........60...... ...70.........80......... 90.........100...... ..
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Query Sequence  AGKVSSRIGLSSPAKLFNQNS. . . . . . . . . . . . . . SLFDEIRAEHEQQAIHCVLVDEC. QFLTRQQVYELSEVVDQ. . LD
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Template Sequence  VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD
Template Known Secondary structure  TT
TSTTGGG
B

GGGTTS


SSTTTT

TTT
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   447..450.........460.........470.........480.........490.........500.........510.........520......
 
   109110.........120.........130.........140..
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Query Sequence  IPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELK
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Template Sequence  RTTLIVAHRLS. . . . . . . . . . . TITHADKIVVIE
Template Known Secondary structure  S
SSGG...........GTTT
S
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   527..530....... ..540.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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