Job Description P23331 Confidence 97.26% Date Thu Jan 5 11:39:23 GMT 2012 Rank 215 Aligned Residues 70 % Identity 11% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	Y	Y	S	A	M	N	A	G	K	S	T	A	L	L	Q	S	S	Y	N	Y	Q	E	R	G	M	R	T	V	V	Y	T	A	E	I	D	D	R	F	G	A	G	K	V	S	S	R	I	G	L	S	S	P	A	K	L	F	N	Q	N	S	S	L	F	D	E	I	R	A	E	H	E	Q	Q	A	I	H	C	V
Query Conservation
Alig confidence																								.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L	V	S	K	W	L	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I
Template Known Secondary structure						S	S	S	S	S													T	.	.	T	S										S	S			S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	S	S
Template Predicted Secondary structure																								.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		85	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	D	E	C	Q	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	D	E	I	D	S	L
Template Known Secondary structure					T	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions