Job Description P23331 Confidence 97.44% Date Thu Jan 5 11:39:23 GMT 2012 Rank 186 Aligned Residues 93 % Identity 12% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	Y	Y	S	A	M	N	A	G	K	S	T	A	L	L	Q	S	S	Y	N	Y	Q	E	R	G	M	R	T	V	V	Y	T	A	E	I	D	D	R	F	G	A	G	K	V	S	S	R	I	G	L	S	S	P	A	K	L	F	N	Q	N	S	S	L	F	D	E	I	R	A	E	H	E	Q	Q	A	I	H	C	V
Query Conservation
Alig confidence																								.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	Q	L	S	C	V
Template Known Secondary structure							S	T	T	S	S													.	.	.			S							G	G	G	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																			T	S	S
Template Predicted Secondary structure																								.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.	.	.	.																.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
		85	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		L	V	D	E	C	Q	.	.	.	.	.	.	.	.	.	.	F	L	T	R	Q	Q	V	Y	E	L	S	E	V	V	D	Q	.	.	.	L	D	I	P	V	L	C	Y	G
Query Conservation								.	.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I	G
Template Known Secondary structure										T	T		B	T	T	T	T	B													T	T				S	T	T
Template Predicted Secondary structure
Template SS confidence
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions