 |
Job Description | P0A725 | Confidence | 22.24% | Date | Thu Jan 5 11:04:35 GMT 2012 |
Rank | 32 | Aligned Residues | 100 |
% Identity | 19% | Template | d2dy1a3 |
SCOP info | Ribosomal protein S5 domain 2-like
| Ribosomal protein S5 domain 2-like
| Translational machinery components
|
Resolution | 1.60 |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
|
|
|
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | Q | R | T | L | K | R | I | V | Q | A | T | G | V | G | L | H | . |
. |
. |
. |
T | G | K | K | V | T | L | T | L | R | P | A | P | A | N | T | G | V | I | Y | R | R | T | D | L | N | P | P | V | D | F | P | A | D | A | K | S | V | R | D | T | M | L | C | T | C | L | V | N | E | H | D | V | R | I | S | T | V | E |
Query Conservation |   |
  |
|   |
|
|   |   |   |
|   |   |   |
|
|
|
|
| . | . | . | . |
|
|   |   |
|   |
|   |
|   |
|
|   |   |   |
|
|
|   |
|   |
|   |
|
|   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
| . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |
|   |   |
|   |
|   |
|   |
|
|
| . |   |   |   |   |   |
| . |   |   |   |
|   |   |
|   | . |
|
|   |   |   |   |   |
|
|
|   |
|   |   |
|
|
| . | . |   |   |
|   | . | . | . | . | . | . |
Template Sequence |   |
Y | R | E | T | I | K | K | V | A | E | G | Q | G | K | Y | K | K | Q | T | G | G | H | G | Q | Y | G | D | V | W | L | R | L | E | P | . |
A | S | E | Y | G | F | . |
E | W | R | I | T | G | G | V | . |
I | P | S | K | Y | Q | E | A | I | E | E | G | I | K | E | A | A | . |
. |
K | K | G | V | . |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
|
| B |
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
| S | S |
|  |  | . |  |  |
|
|
| T | T | S | . | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  |  | . | . | T | S |
| T | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  | . |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |
|
| . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
456 | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | |
490 | . | . | . | . | . | |
. | . | . | . | 500 | . | . | . | |
. | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | |
|
. | . | . | . | |
|
|
|
|
|
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | L | N | A | A | L | A | G | L | G | I | D | N | I | V | I | E | V | N | A | P | E | I | P | I | M | D | G | S | A | A | P | F | V | Y | L | L | L | D | A |
Query Conservation |   |
|
|
|
|
|
|   |   |
|
|
|
|
|   |   |
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |
|   |
|   |
|
|   |
|
|   |
|   |
|   |   |
|   |   |
|   |   |
|
|
|   |   |
|
|   |   |
|
|   |   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
L | A | G | F | P | V | M | G | F | K | A | I | V | Y | N | G | S | Y | H | E | V | D | S | S | D | L | A | F | Q | I | A | A | S | L | A |
Template Known Secondary structure |   |
. | . | . | . | . | T | T | S |
|
| B |
| S |  |  |  |  |  |  |  |  |  |
|
| T | T | T | B |
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
525 | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|