Return to main results Retrieve Phyre Job Id

Job DescriptionP0A725
Confidence100.00%DateThu Jan 5 11:04:35 GMT 2012
Rank1Aligned Residues300
% Identity93%Templatec3nzkB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHL
Query Conservation 
  
 

   
   






  
 
 
 

   


 
 
 

     
 
    
  
   
 
       
 




Alig confidence 















































































Template Conservation 
  
 

   
   






  
 
 
 

   


 
 
 

     
 
    
  
 
 
 
       
 




Template Sequence  MIKQRTLKRIVQATGVGLHTGKKVTLTMRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHL
Template Known Secondary structure 

SS
BTTT



TT


SSSS


GGGB
S
SSS


TT

B

Template Predicted Secondary structure 































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  NAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
Query Conservation 



  




  




 








  

  
  


 

   
    
  

 
      
   
 
   

  

Alig confidence 















































































Template Conservation 



  




  




 








  

  
  


 

   
    
  

 
      
   
 
   
   

Template Sequence  NAALAGLGIDNIIIEVNAPEVPIMDGSASPFVYLLLDAGIEELNSAKKFLRLKETVRVEDGDKWAELSPFNGFRLDFTID
Template Known Secondary structure  T


SSSB
B
TTSSS



S
TT

SS

Template Predicted Secondary structure 





























Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
Query Conservation 
    
  
 
          
  


 




   


 
   


 



 



      

  


  

 




Alig confidence 















































































Template Conservation 
    
  
 
          
  


 




   


 
   


 



 



      

  


  

 




Template Sequence  FNHPAIDSSTQRYRLDFSADSFVRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
Template Known Secondary structure 


TTS
GGGS

TTT


TTT

TT

TTT

SSSB

TT

SSTT
Template Predicted Secondary structure 



































Template SS confidence 















































































   161........170.........180.........190.........200.........210.........220.........230.........240
 
   241........250.........260.........270.........280.........290.........300
Predicted Secondary structure 























Query SS confidence 



























































Query Sequence  LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
Query Conservation 






 
 
 

 
   
 
 

 

  
   
       
 
        
      
Alig confidence 



























































Template Conservation 






 
 
 

 
   
 
 

 

  
   
       
 
        
      
Template Sequence  LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEFVTFQDEAEMPLAFKAP
Template Known Secondary structure  GGGSS
S

T
GGG

S
GGG
S





Template Predicted Secondary structure 





















Template SS confidence 



























































   241........250.........260.........270.........280.........290.........300
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions