|   |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | |
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  | . | . |  |  |  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
S | C | Q | P | V | P | D | S | P | L | D | K | P | E | I | V | A | A | M | A | L | A | A | E | Q | A | G | A | V | A | I | R | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | G | V | A | N | . |
. |
L | Q | A | T | R | A | V | V | S | V | P | I | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   | . | . |
|   |   |
|
|   |   |   |   |   |
|
|
| . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |
|   |
|
|
|
|
|   |
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |
|
|   |   |
|   |
|
|
|
|   |   |   |
|
|   |   |
|
|   |
|   |   |   |   |
|   |
|   |   |
|
|
|   |
|
|   |   |   |
|   |
|   |
|   |   |
|
|
|
|
|   |
|
|
Template Sequence |   |
E | V | S | S | M | P | G | S | F | R | F | T | I | D | R | A | V | E | E | C | K | E | L | Y | D | L | G | I | Q | G | I | D | L | F | G | I | P | E | Q | K | T | E | D | G | S | E | A | Y | N | D | N | G | I | L | Q | Q | A | I | R | A | I | K | K | A | V | P | E | L | C | I | M | T | D | V | A | L | D | P | F | T |
Template Known Secondary structure |   |
 |
| T | T | S | T | T |
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |
|
| S |
|
|
| T | T |
| G | G | G | G |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |
|
| S | G | G | G | S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
51 | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 |
  |
  |   |
|
|
|
|
|
71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
. | . | . | . | . |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
. |
. |
. |
. |
. |
G | I | V | K | R | D | L | E | D | S | P | V | R | I | T | A | Y | I | E | D | V | D | A | L | A | Q | A | G | A | D | I | I | A | I | D | G | T | D | R | P | R | P | V | P | V | E | T | L | L | A | R | I | H | H | H | G | L | L | A | M | T | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
. | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|
|
|   |   |   |
|   |
|   |
|
|   |
|
|   |   |
|   |   |   |
|
|   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
Template Sequence |   |
P | F | G | H | D | G | L | V | K | D | G | I | I | L | N | D | E | T | V | E | V | L | Q | K | M | A | V | S | H | A | E | A | G | A | D | F | V | S | P | S | D | M | M | D | G | R | I | G | A | I | R | E | A | L | D | E | T | D | H | S | D | V | G | I | L | S | Y | A | A | K | Y | A | S | S | F | Y | G | P | F | R |
Template Known Secondary structure |   |
T | T |
|
| S | S |
| B | S | S | S |
| B |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |
|
| S |
|
| T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T | S |  |  |  |  |  |  |  |  | B |
|
| S |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
131 | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
133 | . | . | . | . | . | . | 140 | . | . | . | . | . | |
|
|
|
. | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
. | . | . | 180 | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
C | S | T | P | E | D | G | L | A | C | Q | K | L | . |
. |
. |
. |
G | A | E | I | I | G | T | T | L | S | G | Y | T | T | P | E | T | P | E | E | P | D | L | A | L | V | K | T | L | S | D | . |
A | G | C | R | V | I | A |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |   |   |
|   |   |   |   |   |   | . | . | . | . |
|   |
|   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . |   |   |   |
|
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |
|   |   |
|
|
|
|
|
|
|
|
|   |   |
|   |   |
|
|
|
|
|   |   |   |
|
|   |
|
|
|
|   |   |
|
|
|
| . | . | . | . | . | . | . | . | . |
|   |   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |
|
|   |
|
Template Sequence |   |
D | A | L | H | S | A | P | Q | F | G | D | K | S | T | Y | Q | M | N | P | A | N | T | E | E | A | M | K | E | V | E | L | D | I | V | E | G | A | D | I | V | M | V | K | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
G | L | A | Y | L | D | I | V | W | R | T | K | E | R | F | D | V | P | V | A | I |
Template Known Secondary structure |   |
 |  | S |
|
|
|
|
|
| S |
| S | T | T | T | S | B |
| T | T |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  | S | . | . | . | . | . | . | . | . | . |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  |
| S |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
211 | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . |
  |