|   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | P | V | P | D | S | P | L | D | K | P | E | I | V | A | A | M | A | L | A | A | E | Q | A | G | A | V | A | I | R | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | G | V | A | N | L | Q | A | T | R | A | V | V | S | V | P | I | I | G | I | V | K | R | D | L | E | D | S | P | V | R | I | T | A | Y | I | E | D | V |
Query Conservation |   |
|   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |
|   |   |
|
|   |   |   |   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
| . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|   |   | . | . | . | . |   |
|
|
|   | . | . | . | . | . | . |   |   |   |   |
|
Template Sequence |   |
E | T | S | Y | G | S | P | . |
. |
. |
. |
. |
. |
. |
L | E | A | A | L | A | W | Q | R | S | G | A | E | W | L | H | L | V | D | L | D | A | A | F | G | T | G | D | N | R | A | L | I | A | E | V | A | Q | A | M | D | I | K | V | E | L | . |
. |
. |
. |
S | G | G | I | R | . |
. |
. |
. |
. |
. |
D | D | D | T | L |
Template Known Secondary structure |   |
|
| B |
|
|
|  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  |  |  |  |  |  |  |
| S | S |  |  |  |  | . | . | . | . |  | S | S |
|
| . | . | . | . | . | . | S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . |  |
|
|
|
| . | . | . | . | . | . |
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
28 | . | 30 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | |
|
|
|
. | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 90 |
  |
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | A | L | A | Q | A | G | A | D | I | I | A | I | D | G | T | D | R | P | R | P | V | P | V | E | T | L | L | A | R | I | H | H | H | G | L | L | A | M | T | D | C | S | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | E | D | G | L | A | C | Q | K | L | G | A | E | I | I | G | T | T | L | S | G | Y |
Query Conservation |   |
  |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |
|   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
| . | . |
Template Sequence |   |
A | A | A | L | A | T | G | C | T | R | V | N | L | G | T | A | A | L | E | T | P | E | W | V | A | K | V | I | A | E | H | G | D | K | I | A | V | G | L | D | V | R | G | T | T | L | R | G | R | G | W | T | R | D | G | G | D | L | Y | E | T | L | D | R | L | N | K | E | G | C | A | R | Y | V | V | T | D | I | . |
. |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
| S |  |  |  |  |
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  | T | T |  |  |
|
| S | S | S |
|
|
|
|
| B |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
| . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
| . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
|
  |
  |   |
158 | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
. | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | |
|
|
200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | T | P | E | T | P | E | E | P | D | L | A | L | V | K | T | L | S | D | . |
A | G | C | R | V | I | A | E | G | R | Y | N | T | P | A | Q | A | A | D | A | M | R | H | . |
. |
. |
G | A | W | A | V | T | V | G | S | A | I | T | R | L | E | H | I | C | Q | W | Y | N | T | A | M |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . |   |   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |   | . | . | . |
|
|
|   |
|
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . |
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|
|
|
|   |
|
|
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
G | P | N | L | E | L | L | K | N | V | C | A | A | T | D | R | P | V | V | A | S | G | G | V | S | S | L | D | D | L | R | A | I | A | G | L | V | P | A | G | V | E | G | A | I | V | G | K | A | L | Y | A | K | A | F | T | L | E | E | A | L | E | A | T |
Template Known Secondary structure |   |
. | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  | T |
| S | S |
|  |  |  |  | S |
|
|
| S |  |  |  |  |  |  |  |  | T | T | G | G | G | T |  |  |  |  |  |  |
|  |  |  |  | T | T | S | S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
  |