|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 60 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
M | S | L | L | A | Q | L | D | Q | K | I | A | A | N | G | G | L | I | V | S | C | Q | P | V | P | D | S | P | L | D | K | P | E | I | V | A | A | M | A | L | A | A | E | Q | A | G | A | V | A | I | R | I | E | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | A | N | L | Q | A |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |
|   |   |   |
|   |   |
|   |
|
|   |   |
|
| . | . | . | . | . | . | . |
|
|
|   |   | . | . | . | . |   |
|   |   |   |
|   |
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   |
|   |   |
|
|
|
|   |
|
|   |
|   |   |
|
Template Sequence |   |
L | I | T | V | N | T | L | Q | K | X | K | A | A | G | E | K | I | A | X | L | T | . |
. |
. |
. |
. |
. |
. |
A | Y | E | S | S | . |
. |
. |
. |
F | A | A | L | X | D | D | A | G | V | E | X | L | L | V | G | D | S | L | G | X | A | V | Q | G | R | K | S | T | L | P | V | S | L | R | D | X | C | Y | H | T | E | C |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  | . | . | . | . | . | . | . |
|
| S |  |  | . | . | . | . |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| T | T |  |  |  |  | T | T |
|
| S | S | S | T | T |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . | . | . | . | . |
|
|
|  |  | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | |
|
|
|
|
|
|
. | . | . | . | . | |
|
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
  |
  |   |
61 | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | |
|
. | . | . | . | . | |
|
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . |
|
|
|
|  | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
| . |
. |
Query Sequence |   |
T | R | A | V | V | S | V | P | I | I | G | I | V | K | R | D | L | E | D | S | P | V | R | I | T | A | Y | I | E | D | V | D | A | L | A | Q | A | G | A | D | I | I | A | I | D | G | T | D | R | P | R | P | V | P | V | E | T | L | L | A | R | I | H | H | H | G | L | L | A | M | T | . |
. |
D | C | S | T | P | . |
. |
Query Conservation |   |
|
|   |   |   |   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   | . | . |   |
|   |
|   | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . | . |
Template Conservation |   |
|   |
|
|   |   |   |
|   |
|
|
|
|
|
|
|   |
|
|   |   |
|   |
|   |
|   |   |   |
|   |
| . |
|   |
|   |
|
|   |
|
|
|
| . | . | . | . | . |
|
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|
|   |
|
|
|
|
|
|
|
|
|   |
Template Sequence |   |
V | A | R | G | A | K | N | A | X | I | V | S | D | L | P | F | G | A | Y | Q | Q | S | K | E | Q | A | F | A | A | A | A | E | . |
L | X | A | A | G | A | H | X | V | K | L | . |
. |
. |
. |
. |
E | G | G | V | W | X | A | E | T | T | E | F | L | Q | X | R | G | I | P | V | C | A | H | I | G | L | T | P | Q | S | V |
Template Known Secondary structure |   |
 |  |  |  |
| S | S | S |  |  |  |  |  |
|
| T | T | S | S | S | S |
|  |  |  |  |  |  |  |  |  |  | . |  |  |  | T | T |
| S |  |  |  |  | . | . | . | . | . |  |
| S | G | G | G |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  | S |
| G | G | G | T |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
. | . | . | . | . | . | . | . | 110 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
137 | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
E | D | G | L | A | C | Q | K | L | G | A | E | I | I | G | T | T | L | S | G | Y | T | T | P | E | T | P | E | E | P | D | L | A | L | V | K | T | L | S | D | A | G | C | R | V | I | A | E | G | R |
Query Conservation |   |
. | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |
|
|
|
|
|
|
|
|
Template Sequence |   |
F | A | K | A | Q | A | L | L | N | D | A | K | A | H | D | D | A | G | A | A | V | V | L | X | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
C | V | L | A | E | L | A | K | K | V | T | E | T | V | S | C | P | T | I | G | I | G | A |
Template Known Secondary structure |   |
T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | S |
|
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
144 | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . |
  |