Job Description P0A761 Confidence 83.87% Date Thu Jan 5 11:04:55 GMT 2012 Rank 447 Aligned Residues 217 % Identity 19% Template c3l52A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase; PDBTitle: crystal structure of putative orotidine 5'-phosphate2 decarboxylase from streptomyces avermitilis ma-4680 Resolution 1.35 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.											.	.	.	.	.	.	.	60	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	L	L	A	Q	L	D	Q	K	I	A	A	N	G	G	L	I	V	S	C	Q	.	.	.	.	.	.	.	.	.	P	V	P	D	S	P	L	D	K	P	E	I	V	A	A	M	A	L	A	A	E	Q	A	G	A	V	A	I	R	I	.	.	.	.	.	.	.	.	.	.	E	G	V	A	N	L	Q	A	T
Query Conservation																								.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.																								.							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.
Template Sequence		E	P	F	G	A	R	L	S	R	A	X	D	D	R	G	P	L	C	V	G	I	D	P	H	A	S	L	L	A	D	W	G	L	S	D	D	V	A	G	L	E	R	F	S	R	T	V	V	E	A	L	G	E	H	.	V	A	V	F	K	P	Q	S	A	F	F	E	R	F	G	S	R	G	V	A	V	L	E	K	T
Template Known Secondary structure																	S															T	T			S	S																T	T	T	.		S					B						T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
					62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.																																					.	.	.	.
Query SS confidence		.	.	.																																					.	.	.	.
Query Sequence		.	.	.	R	A	V	V	S	V	P	I	I	G	I	V	K	R	D	L	E	D	S	P	V	R	I	T	A	Y	I	E	D	V	D	A	L	A	Q	A	.	.	.	.	G	A	D	I	I	A	I	D	G	T	D	R	P	R	P	V	P	V	E	T	L	L	A	R	I	H	H	H	G	L	L	A	M	T	D	C	S
Query Conservation		.	.	.																																					.	.	.	.
Alig confidence		.	.	.																					.	.	.	.	.												.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		V	A	E	A	R	A	A	G	A	L	V	V	X	D	A	K	R	G	D	I	G	S	T	.	.	.	.	.	X	A	A	Y	A	E	A	F	L	R	K	D	S	P	L	F	S	D	A	L	T	V	S	P	Y	L	G	Y	G	S	L	R	P	A	V	E	L	A	R	E	S	G	A	G	L	F	V	L	A	L	T	S
Template Known Secondary structure								T	T																.	.	.	.	.									S	S	T	T	S	T	T			S							T	T		G	G	G	G											T
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		135	.																			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Query Sequence		T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	G	L	A	C	Q	K	L	G	A	E	I	I	G	T	T	L	S	G	Y	T	T	P	E	T	P	E	E	P	D	L	A	L	V	K	T	L	S	D	A	G	C	R	V	I	A	E	G	.	.	.	.	R	Y	N	T	P	A	Q
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.																	.	.	.	.			.
Template Conservation																																																			.	.	.	.																							.
Template Sequence		N	P	E	G	G	E	V	Q	H	A	V	R	T	D	G	R	D	V	A	A	T	X	L	A	H	L	A	A	E	N	A	G	E	E	P	L	G	S	F	G	A	V	V	G	A	T	L	G	D	.	.	.	.	L	S	S	Y	D	L	D	I	N	G	P	L	L	A	P	G	I	G	A	Q	G	A	.	A	P	A	D
Template Known Secondary structure		S	T	T	T					T		B		T	T	S		B													T	T	T		S	S			S							T	T		S		.	.	.	.	G	G	G	S				S	S	S							T	T	S	T	T		.	S	G	G	G
Template Predicted Secondary structure																																																			.	.	.	.																							.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.
		193	.	.	.	.		.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.								.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure							.							.											.	.	.	.	.	.	.
Query SS confidence							.							.											.	.	.	.	.	.	.
Query Sequence		A	A	D	A	M	.	R	H	G	A	W	A	.	V	T	V	G	S	A	I	T	R	L	.	.	.	.	.	.	.	E	H	I	C	Q	W	Y	N	T	A	M	K	K	A	V
Query Conservation							.							.											.	.	.	.	.	.	.
Alig confidence							.							.											.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	G	V	F	G	A	A	V	R	N	V	V	P	N	V	S	R	G	V	L	R	H	G	P	D	V	R	A	L	R	T	A	A	D	R	F	A	E	E	I	R	A	A	V
Template Known Secondary structure							G	G	G	G	G	G						S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions