|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | S | L | L | A | Q | L | D | Q | K | I | A | A | N | G | G | L | I | V | S | C | Q | P | V | P | D | S | P | L | D | K | P | E | I | V | A | A | M | A | L | A | A | E | Q | A | G | A | V | A | I | R | I | . |
. |
E | G | V | A | N | L | Q | A | T | R | A | V | V | S | V | P | I | I | G | I | V | K | R | D | L | E |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   | . | . |   |   |   |
|   |
|   |   |
|
|   |   |   |   |   |
|
|
|   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |
| . | . | . | . | . |   |   |   |   |
|
|   |
|
| . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |
|
|
|   |   |
|
|
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   | . |   |   |   |   |
|
|
|
|
|
|   |
Template Sequence |   |
M | D | P | L | A | V | L | . |
. |
. |
. |
. |
A | E | S | R | L | L | P | L | L | . |
. |
. |
. |
. |
. |
T | V | R | G | G | E | D | L | L | G | L | A | R | V | L | E | E | E | G | V | G | A | L | E | I | T | L | R | T | E | K | G | L | E | A | L | K | A | L | R | K | . |
S | G | L | L | L | G | A | G | T | V | R |
Template Known Secondary structure |   |
|
| T | T |  |  |  | . | . | . | . | . |  |  |  | T |  |  |  |  |  | . | . | . | . | . | . |
|
|
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  | T | T | . | S | S |
|  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  | . | . | . | . | . |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | |
|
|
|
|
|
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
. | . | . | . | . | . | . | . | . | 70 | . |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | S | P | V | R | I | T | A | Y | I | E | D | V | D | A | L | A | Q | A | G | A | D | I | I | A | I | D | G | T | D | R | P | R | P | V | P | V | E | T | L | L | A | R | I | H | H | H | G | L | L | A | M | T | D | C | S | T | P | E | D | G | L | A | C | Q | K | L | G | A | E | I | I | G | T | T | L | S | G | Y | T |
Query Conservation |   |
  |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |
|   |   |
Alig confidence |   |
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   | . | . | . | . | . | . | . | . |
|   |   |   |   |
|   |   |   |
|
|
|
|
|   |   |
|   |   |
| . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|   |
|   |
|
|   |   |   |
|   |   |   |
|
|
|   |
|
|   |
|
|
|   |   |   |
Template Sequence |   |
S | P | . |
. |
. |
. |
. |
. |
. |
. |
K | E | A | E | A | A | L | E | A | G | A | A | F | L | V | S | P | G | L | L | . |
. |
. |
. |
. |
. |
. |
E | E | V | A | A | L | A | Q | A | R | G | V | P | Y | L | P | G | V | L | T | P | T | E | V | E | R | A | L | A | L | G | L | S | A | L | K | F | F | P | A | E | P | F |
Template Known Secondary structure |   |
S |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  | S | S |
|
| . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |
| S |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| S | T | T | T | T |
Template Predicted Secondary structure |   |
|  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
  |
  |   |
159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | |
|
. | . | . | . | . | . | . | . | 220 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | P | E | T | P | E | E | P | D | L | A | L | V | K | T | L | S | D | A | G | C | R | V | I | A | E | G | R | Y | N | T | P | A | Q | A | A | D | A | M | R | H | G | A | W | A | V | T | V | G | S | A | I | T | . |
. |
R | L | E | H | I | C | Q | W | Y | N | T | A | M | K |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|   | . | . |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
Alig confidence |   |
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
| . | . | . |   |   |   |
|   |   |
|   |   |   |   |
| . | . |   |
|
|   |   |
|
|
|
|
| . |   |   |   |
|   |   |   |   |
|   |
|
|
|   |   |
|
|   |
|
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
Template Sequence |   |
Q | G | . |
. |
. |
V | R | V | L | R | A | Y | A | E | V | F | P | . |
. |
E | V | R | F | L | P | T | G | G | I | . |
K | E | E | H | L | P | H | Y | A | A | L | P | N | L | L | A | V | G | G | S | W | L | L | Q | G | N | L | E | A | V | R | A | K | V | R | A | A | K | A |
Template Known Secondary structure |   |
T |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
| T | . | . | T |
|  |  |  |  | B | S | S |
| . |
| G | G | G |  |  |  |  |  | T |
| S | S | B | S |
|  |  |  | S | G | G | G |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
137 | . | |
|
|
. | 140 | . | . | . | . | . | . | . | . | . | 150 | |
|
. | . | . | . | . | . | . | . | . | 160 | |
. | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
  |