Job Description P0A761 Confidence 72.90% Date Thu Jan 5 11:04:55 GMT 2012 Rank 485 Aligned Residues 141 % Identity 16% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.
Query Sequence		I	V	A	A	M	A	L	A	A	E	Q	A	G	A	V	A	I	R	I	.	.	.	.	.	.	.	E	G	V	A	N	L	Q	A	T	R	A	V	V	S	V	P	I	I	G	I	V	K	R	D	L	E	D	S	P	V	R	I	T	A	Y	I	E	D	V	D	A	L	A	Q	A	G	A	D	I	I	A	I	D	G
Query Conservation																					.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	.	.	.	.	.	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T
Template Known Secondary structure													T	T											S	S	S														T										S								.	.	.	.	.									T	T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		107	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																																		.	.	.	.	.
Query SS confidence								.	.	.	.	.																																		.	.	.	.	.
Query Sequence		T	D	R	P	R	P	.	.	.	.	.	V	P	V	E	T	L	L	A	R	I	H	H	H	G	L	L	A	M	T	D	C	S	T	P	E	D	G	L	A	C	Q	K	L	.	.	.	.	.	G	A	E	I	I	G	T	T	L	S	G	Y	T	T	P	E	T	P	E	E	P	D	L	A	L	V	K	T	L	S	D
Query Conservation								.	.	.	.	.																																		.	.	.	.	.
Alig confidence								.	.	.	.	.																																		.	.	.	.	.																.	.	.												.	.
Template Conservation																																																																		.	.	.												.	.
Template Sequence		S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A	C	E	A	Q	A	K	A	F	K	D	K	V	D	V	A	S	V	I	V	T	K	L	D	G	H	A	K	.	.	.	G	G	G	A	L	S	A	V	A	A	T	.	.
Template Known Secondary structure						T	T																		S								T	T			T	T																						T	T	S				.	.	.		T										.	.
Template Predicted Secondary structure																																																																		.	.	.												.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	C	R	V	I	A	E	G
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	K	S	P	I	I	F	I	G
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			267	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions