Job Description P0A761 Confidence 82.10% Date Thu Jan 5 11:04:55 GMT 2012 Rank 454 Aligned Residues 142 % Identity 16% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		34	.	.	.	.	.	40	.	.	.		.	.	.								.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure												.				.	.	.	.	.	.	.
Query SS confidence												.				.	.	.	.	.	.	.
Query Sequence		I	V	A	A	M	A	L	A	A	E	.	Q	A	G	.	.	.	.	.	.	.	A	V	A	I	R	I	E	G	V	A	N	L	Q	A	T	R	A	V	V	S	V	P	I	I	G	I	V	K	R	D	L	E	D	S	P	V	R	I	T	A	Y	I	E	D	V	D	A	L	A	Q	A	G	A	D	I	I	A	I	D
Query Conservation												.				.	.	.	.	.	.	.
Alig confidence												.				.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation																																																												.	.	.	.	.
Template Sequence		S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	.	.	.	.	.	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D
Template Known Secondary structure		T										T	S	S	S					B						S	S	S		S											T	T							S	S				T	T					.	.	.	.	.									T	T		S
Template Predicted Secondary structure																																																												.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		106	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.																																		.	.	.	.	.
Query SS confidence									.	.	.	.	.																																		.	.	.	.	.
Query Sequence		G	T	D	R	P	R	P	.	.	.	.	.	V	P	V	E	T	L	L	A	R	I	H	H	H	G	L	L	A	M	T	D	C	S	T	P	E	D	G	L	A	C	Q	K	L	.	.	.	.	.	G	A	E	I	I	G	T	T	L	S	G	Y	T	T	P	E	T	P	E	E	P	D	L	A	L	V	K	T	L	S
Query Conservation									.	.	.	.	.																																		.	.	.	.	.
Alig confidence									.	.	.	.	.																																		.	.	.	.	.																		.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G	.	.	.	.	.	.	A	A	L	S	I	R	H
Template Known Secondary structure							S	S																		S								T	T	T	G	G	G	G									T	T		S	S								S	S	S		S			T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.
		176	.	.	.	180	.	.	.	.	.		.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		D	A	G	C	R	V	I	A	E	G	.	R
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		I	T	G	K	P	I	K	F	L	G	V	G
Template Known Secondary structure		T	T	T			B						S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions