Job Description P0A761 Confidence 78.24% Date Thu Jan 5 11:04:55 GMT 2012 Rank 469 Aligned Residues 142 % Identity 15% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		34	.	.	.	.	.	40	.	.	.	.	.	.								.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.
Query Sequence		I	V	A	A	M	A	L	A	A	E	Q	A	G	.	.	.	.	.	.	.	A	V	A	I	R	I	E	G	V	A	N	L	Q	A	T	R	A	V	V	S	V	P	I	I	G	I	V	K	R	D	L	E	D	S	P	V	R	I	T	A	Y	I	E	D	V	D	A	L	A	Q	A	G	A	D	I	I	A	I	D	G
Query Conservation															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	.	.	.	.	.	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T
Template Known Secondary structure		T										T	T	S					B						S	S	S		S											T	T							S	S				T	T					.	.	.	.	.									T	T		S
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		107	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.																																			.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.																																			.	.	.	.	.
Query Sequence		T	D	R	P	R	.	.	.	.	.	.	.	P	V	P	V	E	T	L	L	A	R	I	H	H	H	G	L	L	A	M	T	D	C	S	T	P	E	D	G	L	A	C	Q	K	L	.	.	.	.	.	G	A	E	I	I	G	T	T	L	S	G	Y	T	T	P	E	T	P	E	E	P	D	L	A	L	V	K	T	L
Query Conservation							.	.	.	.	.	.	.																																			.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																																			.	.	.	.	.																		.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.
Template Sequence		A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I	T	K	M	D	G	T	A	K	G	G	.	.	.	.	.	.	G	A	L	S	A	V
Template Known Secondary structure				S			S	S	T																		S								T	T	T	G	G	G	G									T	T		S	S								S	S	S		S			T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260
		175	.	.	.	.	180	.	.	.	.	.		.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		S	D	A	G	C	R	V	I	A	E	G	.	R
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		V	A	T	G	A	T	I	K	F	I	G	T	G
Template Known Secondary structure			T	T	T			B						S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions