Job Description Q6BEX0 Confidence 98.39% Date Thu Jan 5 12:37:24 GMT 2012 Rank 88 Aligned Residues 135 % Identity 21% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.						.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.		.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																									.	.	.	.	.	.	.	.		.
Query SS confidence																.	.	.	.	.																																									.	.	.	.	.	.	.	.		.
Query Sequence		T	D	Q	H	Q	E	I	L	R	T	E	G	L	S	.	.	.	.	.	K	F	F	P	G	V	K	A	L	D	N	V	D	F	S	L	R	R	G	E	I	M	A	L	L	G	E	N	G	A	G	K	S	T	L	I	K	A	L	T	.	.	.	.	.	.	.	.	G	.	V	Y	H	A	D	R	G	T	I	W	L
Query Conservation																.	.	.	.	.																																									.	.	.	.	.	.	.	.		.
Alig confidence																.	.	.	.	.																																									.	.	.	.	.	.	.	.		.
Template Conservation
Template Sequence		L	E	K	G	Q	G	R	I	I	L	K	A	S	R	H	A	C	V	E	V	Q	D	E	I	A	F	I	P	N	D	V	Y	F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	E	S	A	E	V	S	I
Template Known Secondary structure				T	T		S										T	T	T	T	T	S	T	T												T	T	S	S								S	T	T	S	S																	T	T			B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	Q	A	I	S	P	K	N	T	A	H	A	Q	Q	L	G	I	G	T	V	Y	Q	E	V	N	L	L	P	N	M	S	V	A	D	N	L	F	I	G	R	E	P	K	R	F	G	L	L	R	R	K	E	M	E	K	R	A	T	E	L	M	A	S	Y	G	F	S	L	D	V	R	E	P	L	N	R	F	S	V
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	C	I	L	A	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T
Template Known Secondary structure			S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		705	.	.	.	.	710	.	.	.																																																																						.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																.	.																										.								.
Query SS confidence																.	.																										.								.
Query Sequence		A	M	Q	Q	I	V	A	I	C	R	A	I	D	L	.	.	S	A	K	V	L	I	L	D	E	P	T	A	S	L	D	T	Q	E	V	E	L	L	F	D	L	.	M	R	Q	L	R	D	R	.	G	V	S	L	I	F	V	T	H	F	L	D
Query Conservation																.	.																										.								.
Alig confidence																.	.																										.								.
Template Conservation
Template Sequence		F	M	A	E	M	L	E	T	A	S	I	L	R	S	A	T	K	D	S	L	I	I	I	D	E	L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H	F	H	E
Template Known Secondary structure														T	T			T	T	S						S				S	S																			T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions