Job Description P33129 Confidence 25.51% Date Thu Jan 5 11:51:11 GMT 2012 Rank 56 Aligned Residues 92 % Identity 18% Template d2ag4a1 SCOP info Ganglioside M2 (gm2) activator Ganglioside M2 (gm2) activator Ganglioside M2 (gm2) activator Resolution 1.80

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		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																						.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	V	S	I	R	G	I	R	L	Y	S	D	S	R	M	L	P	P	T	L	A	S	F	A	P	I	I	H	G	V	A	N	T	N	A	.	.	.	K	V	T	I	T	Q	G	G	Y	K	I	Y	E	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	A	V	I	R	S	L	T	L	E	P	D	P	I	V	V	P	G	N	V	T	L	S	V	V	G	S	T	S	V	P	L	S	S	P	L	K	V	D	L	V	L	E	K	E	V	A	G	L	W	I	K	I	P	C	T	D	Y	I	G	S	C	T	F	E	H	F	C	D	V	L	D	M	L	I	P	T	G	E
Template Known Secondary structure			S										S	S	S				S												S	S		B		S	S												T	T						B		B	T	T	B	S	B														S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
																		311	.	.	.	.	.	.	.	.	320										.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	P	G	A	F	V	I	D	D	.	.	.	.	.	.	.	.	.	L	S	P	S	G	Y	G	S	D	L	I	V	T	I	E	E	S	D	G	S	K	R	T	F	S	Q	P	F	S	S	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	C	P	E	P	L	R	T	Y	G	L	P	C	H	C	P	F	K	E	G	T	Y	S	L	P	K	S	E	F	V	V	P	D	L	E	L	P	S	W	L	T	T	G	N	Y	R	I	E	S	V	L	S	S	S	G	K	R	L	G	C	I	K	I	A	A	S
Template Known Secondary structure					T	T					T				S	S		B		S																			T	T		S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions