Job Description P77526 Confidence 100.00% Date Thu Jan 5 12:30:17 GMT 2012 Rank 22 Aligned Residues 189 % Identity 18% Template c3lykA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:stringent starvation protein a homolog; PDBTitle: structure of stringent starvation protein a homolog from2 haemophilus influenzae Resolution 2.10 Å

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		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		M	I	D	L	Y	F	A	P	.	T	P	N	G	H	K	I	T	L	F	L	E	E	A	E	L	D	Y	R	L	I	K	V	D	L	G	K	G	G	Q	F	R	P	E	F	L	R	I	S	P	N	N	K	I	P	A	I	V	D	H	S	P	A	D	G	G	E	P	L	S	L	F	E	S	G	A	I	L	L	Y	L
Query Conservation										.
Alig confidence										.																										.	.	.																						.	.	.	.	.	.	.
Template Conservation																																				.	.	.																						.	.	.	.	.	.	.
Template Sequence		V	X	T	L	F	S	N	K	D	D	I	Y	C	H	Q	V	K	I	V	L	A	E	K	G	V	L	Y	E	N	A	E	V	D	L	.	.	.	Q	A	L	P	E	D	L	X	E	L	N	P	Y	G	T	V	P	T	L	V	D	.	.	.	.	.	.	.	R	D	L	V	L	F	N	S	R	I	I	X	E	Y	L
Template Known Secondary structure									T	T															T										T	.	.	.	T	S										T	T			S						.	.	.	.	.	.	.	T	T					S
Template Predicted Secondary structure																																				.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	T	G	L	F	L	S	H	E	T	R	E	R	A	A	T	L	Q	W	L	F	W	Q	V	G	G	L	G	P	M	L	G	Q	N	H	H	F	N	H	A	A	P	Q	T	I	P	Y	A	I	E	R	Y	Q	V	E	T	Q	R	L	Y	H	V	L	N	K	R	L	E	N	S	P	W	L	G	G	E	N	Y
Query Conservation
Alig confidence																											.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		D	E	R	F	P	H	P	P	L	X	Q	V	Y	P	V	S	R	A	K	D	R	L	L	X	L	.	.	.	.	.	R	I	E	Q	D	W	Y	P	T	L	A	K	A	E	N	G	T	E	K	E	K	T	S	A	L	K	Q	L	K	E	E	L	L	G	I	A	P	I	F	Q	Q	X	P	Y	F	X	N	E	E	F
Template Known Secondary structure					S		S	S			S		S	S													.	.	.	.	.						T										S																			T							S	S	B	T	T	B	S	S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		S	I	A	D	I	A	C	W	P	W	V	N	A	W	T	R	Q	R	I	D	L	.	.	A	M	Y	P	A	V	K	N	W	H	E	R	I	R	S	R	P	A	T	G	Q	A	L	L
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		G	L	V	D	C	Y	V	A	P	L	L	W	K	L	K	H	L	G	V	E	F	T	G	T	G	S	K	A	I	K	A	Y	X	E	R	V	F	T	R	D	S	F	L	Q	S	V	G
Template Known Secondary structure																	T	T	T					S	T	T													T	S							T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions