Job Description P77526 Confidence 100.00% Date Thu Jan 5 12:30:17 GMT 2012 Rank 20 Aligned Residues 193 % Identity 19% Template c1yy7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: crystal structure of stringent starvation protein a (sspa),2 an rna polymerase-associated transcription factor Resolution 2.02 Å

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		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		M	I	D	L	Y	F	A	P	.	T	P	N	G	H	K	I	T	L	F	L	E	E	A	E	L	D	Y	R	L	I	K	V	D	L	G	K	G	G	Q	F	R	P	E	F	L	R	I	S	P	N	N	K	I	P	A	I	V	D	H	S	P	A	D	G	G	E	P	L	S	L	F	E	S	G	A	I	L	L	Y	L
Query Conservation										.
Alig confidence										.																										.	.	.																						.	.	.	.	.	.	.
Template Conservation																																				.	.	.																						.	.	.	.	.	.	.
Template Sequence		V	M	T	L	F	S	G	P	T	D	I	F	S	H	Q	V	R	I	V	L	A	E	K	G	V	S	V	E	I	E	Q	V	E	A	.	.	.	D	N	L	P	Q	D	L	I	D	L	N	P	Y	R	T	V	P	T	L	V	D	.	.	.	.	.	.	.	R	E	L	T	L	Y	E	S	R	I	I	M	E	Y	L
Template Known Secondary structure		S							T	T															T										T	.	.	.	T	S										T	T			S	S					.	.	.	.	.	.	.	T	T					S
Template Predicted Secondary structure																																				.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	T	G	L	F	L	S	H	E	T	R	E	R	A	A	T	L	Q	W	L	F	W	Q	V	G	G	L	G	P	M	L	G	Q	N	H	H	F	N	H	A	A	P	Q	T	I	P	Y	A	I	E	R	Y	Q	V	E	T	Q	R	L	Y	H	V	L	N	K	R	L	E	N	S	P	W	L	G	G	E	N	Y
Query Conservation
Alig confidence																											.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		D	E	R	F	P	H	P	P	L	M	P	V	Y	P	V	A	R	G	S	S	R	L	M	M	H	.	.	.	.	.	R	I	E	H	D	W	Y	S	L	L	Y	K	I	E	Q	G	N	A	Q	E	A	E	A	A	R	K	Q	L	R	E	E	L	L	S	I	A	P	V	F	N	E	T	P	F	F	M	S	E	E	F
Template Known Secondary structure							S	S			S		S	S													.	.	.	.	.						T										S																			T	T	T						S	B	T	T	B	S	S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		S	I	A	D	I	A	C	W	P	W	V	N	A	W	T	R	Q	R	I	D	L	.	.	A	M	Y	P	A	V	K	N	W	H	E	R	I	R	S	R	P	A	T	G	Q	A	L	L	K	A	Q	L
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		S	L	V	D	C	Y	L	A	P	L	L	W	R	L	P	V	L	G	I	E	F	T	G	A	G	S	K	E	L	K	G	Y	M	T	R	V	F	E	R	D	A	F	L	A	S	L	T	E	A	E	R
Template Known Secondary structure														T	G	G	G	G	T					S	T	T													T	S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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