Job Description P39830 Confidence 96.95% Date Thu Jan 5 12:00:54 GMT 2012 Rank 141 Aligned Residues 128 % Identity 9% Template c3ew7A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo0794 protein; PDBTitle: crystal structure of the lmo0794 protein from listeria2 monocytogenes. northeast structural genomics consortium3 target lmr162. Resolution 2.73 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure								.																																																																				.	.	.	.	.	.
Query SS confidence								.																																																																				.	.	.	.	.	.
Query Sequence		A	L	L	V	G	Y	.	G	R	V	G	S	L	L	G	E	K	L	L	A	S	D	I	P	L	V	V	I	E	T	S	R	T	R	V	D	E	L	R	E	R	G	V	R	A	V	L	G	N	A	A	N	E	E	I	M	Q	L	A	H	L	E	C	A	K	W	L	I	L	T	I	P	N	G	.	.	.	.	.	.
Query Conservation								.																																																																				.	.	.	.	.	.
Alig confidence								.																																																					.	.	.	.												.	.	.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		I	G	I	I	G	A	T	G	R	A	G	S	R	I	L	E	E	A	K	N	R	G	H	E	V	T	A	I	V	R	N	A	G	K	I	T	Q	T	H	K	D	I	N	I	L	Q	K	D	I	F	D	L	T	L	S	D	L	S	D	.	.	.	.	Q	N	V	V	V	D	A	Y	G	I	S	P	D	E	A	E	K
Template Known Secondary structure						T	T	T	S													T	T								S		S								S	S	S							G	G	G							T	T	.	.	.	.		S								S	S	T	T	T	T	T	S
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
				493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.													.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.												.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																									.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																									.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	Y	E	A	G	E	I	V	A	S	A	R	A	K	N	P	D	I	E	I	I	A	R	A	H	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	D	E	V	A	Y	I	T	E	R	G	A	N	Q	V	V	.	.	.	.	.	.	.	.	.	.	.	M	G	E	R	E	I	A	R	T	M	L	E	L	L
Query Conservation		.	.																									.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																									.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	T	S	L	D	H	L	I	S	V	L	N	G	T	V	S	P	R	L	L	V	V	G	G	A	A	A	P	Y	Y	P	T	A	R	A	Q	A	K	Q	L	E	H	L	K	S	H	Q	A	E	F	S	W	T	Y	I	S	P	S	A	X	F	E	P	G	F	I	S	X	E	D	Y	A	I	A	V	L	D	E	I
Template Known Secondary structure															S			S	S													S															T	T	T	T	T	S								S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		548	.	550	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	P	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	P	N
Template Known Secondary structure			S		S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions