 |
Job Description | P39830 | Confidence | 96.98% | Date | Thu Jan 5 12:00:54 GMT 2012 |
Rank | 136 | Aligned Residues | 108 |
% Identity | 13% | Template | c3egoB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:probable 2-dehydropantoate 2-reductase; |
PDBTitle: crystal structure of probable 2-dehydropantoate 2-reductase2 pane from bacillus subtilis
|
Resolution | 1.90 Å |
|
 |
  |   |
420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | L | L | V | G | Y | G | R | V | G | S | L | L | G | E | K | L | L | A | S | D | I | P | L | V | V | I | E | T | S | R | T | R | V | D | E | L | R | E | R | G | V | R | A | V | L | G | N | . |
. |
. |
. |
. |
. |
A | A | N | E | E | I | M | Q | L | A | H | L | E | C | A | K | W | L | I | L | T | I | P | N | G | Y |
Query Conservation |   |
|
|
|   |
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
| . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|   |   |
|
|   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|   |
|   |   |
|   |   |   |
|   |   |
| . |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |
Template Sequence |   |
I | G | I | I | G | G | G | S | V | G | L | L | C | A | Y | Y | L | . |
S | L | Y | H | D | V | T | V | V | T | R | R | Q | E | Q | A | A | A | I | Q | S | E | G | I | R | L | Y | K | G | G | E | E | F | R | A | D | C | S | A | D | T | . |
. |
. |
. |
S | I | N | S | D | F | D | L | L | V | V | T | V | K | Q | H | Q |
Template Known Secondary structure |   |
 |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | . | T | T | T | S |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  | T | T |  |  |  |  |  |
|
|  |  |  | S | . | . | . | . | S |
|
| S |
|
| S |  |  |  |  |
|
|
| G | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
|
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
  |
  |   |
494 | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | A | G | E | I | V | A | S | A | R | A | K | N | P | D | I | E | I | I | A | R | A | H | Y | D | D | E | V | A | Y | I | T | E | R | G | A | N | Q | V | V |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|
Alig confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   | . |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | Q | S | . |
V | F | S | S | L | E | R | I | G | K | T | N | I | L | F | L | Q | N | G | M | G | H | I | H | D | L | K | D | W | H | V | G | H | S | I | Y |
Template Known Secondary structure |   |
 |  |  | . |  |  |  |  |  |  | T | S |
| S |
|  |  |  |  |
|
| S | S | S |  |  |  |  |  |  |  | T |
|
|
| S | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  | . |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | |
. | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|