Job Description P39830 Confidence 95.22% Date Thu Jan 5 12:00:54 GMT 2012 Rank 398 Aligned Residues 117 % Identity 13% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460												.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	I	C	N	H	A	L	L	V	G	Y	G	R	V	G	S	L	L	G	E	K	L	L	A	S	D	I	P	L	V	V	I	E	T	S	R	T	R	V	D	E	L	R	E	R	G	.	.	.	.	.	.	.	.	.	.	.	V	R	A	V	L	G	N	A	A	N	E	E	I	M	Q	L	A	H	L	E	C	A
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																																																																				.	.
Template Sequence		H	P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	T	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	.	.	L	A	F	V	R	Q	T	P	D	N	T	Y
Template Known Secondary structure		S	S											T	T	S							T	T		T	T									S																	G	G	G	G		T	T						S			.	.						T	S		T	T
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170
		483	.	.	.	.	.	.	490	.	.	.	.	.	.					.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.									.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		K	W	L	I	L	T	I	P	N	G	Y	E	A	G	.	.	.	.	E	I	V	A	S	A	R	A	K	N	P	D	I	E	I	I	A	R	A	H	Y	.	.	.	.	.	.	.	.	D	D	E	V	A	Y	I	T	E	R	G	A	N	Q	V
Query Conservation																.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	V	I	I	D	T	T	D	P	A	S	K	L	F	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V
Template Known Secondary structure									S						S	S																									T	T	T																T		S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions