Return to main results Retrieve Phyre Job Id

Job DescriptionP39830
Confidence99.88%DateThu Jan 5 12:00:54 GMT 2012
Rank11Aligned Residues133
% Identity20%Templatec2g1uA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   414.....420.........430.........440.........450......... 460.........470.........480.........490..
Predicted Secondary structure 















.














Query SS confidence 













































.
































Query Sequence  VDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER. GVRAVLGNAANEEIMQLAHLECAKWLILTIPNG
Query Conservation       



 
 
  
  
   
      
 


 
          .    
 

      
  
 
  
  

     
Alig confidence 













































.
































Template Conservation        


 
 
  
  

  
   
  



                     
      
    
  
  

     
Template Sequence  KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD
Template Known Secondary structure  .





STT
S
GGGGGGS
TT

SS
TTSTTTGGG
S
SS
Template Predicted Secondary structure 


























Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   493......500.........510.........520.........530.........540.......
Predicted Secondary structure 










Query SS confidence 






















































Query Sequence  YEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELL
Query Conservation    
       
       


          
   
 
 

 
    
       
Alig confidence 





































.















Template Conservation    
       
       

           
   
  . 
 
    
  
   
Template Sequence  STNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIK. TICPAVLMIEKVKEFI
Template Known Secondary structure  TS

S
SSGGGTTT
.
Template Predicted Secondary structure 









.
Template SS confidence 






















































   84.....90.........100.........110.........120. ........130.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions