Job Description P39830 Confidence 99.96% Date Thu Jan 5 12:00:54 GMT 2012 Rank 1 Aligned Residues 347 % Identity 16% Template c1zcdA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa Resolution 3.45 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	G	L	V	L	A	F	I	L	G	M	L	A	N	K	L	R	I	S	P	L	V	G	Y	L	L	A	G	V	L	A	G	P	F	T	P	G	F	V	A	D	T	K	L	A	P	E	L	A	E	L	G	V	I	L	L	M	F	G	V	G	L	H	F	S	L	K	D	L	M	A	V	K	A	I	A	I	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	I	L	I	I	A	A	I	L	A	M	I	M	A	N	S	G	A	T	S	G	W	Y	H	D	F	L	E	T	P	V	Q	L	R	V	G	S	L	E	I	N	K	N	M	L	L	W	I	N	D	A	L	M	A	V	F	F	L	L	V	G	L	E	V	K	R	E	L	M	Q	G	S	L	A	S	L	R	Q	A
Template Known Secondary structure																			S	S	S								T	T								T	T																																	S	T	T	T	S	S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																																.
Query SS confidence																					.	.																																.
Query Sequence		A	I	A	Q	I	A	V	A	T	L	L	G	M	A	L	S	A	V	L	.	.	G	W	S	L	M	T	G	I	V	F	G	L	C	L	S	T	A	S	T	V	V	L	L	R	A	L	E	E	R	Q	L	.	I	D	S	Q	R	G	Q	I	A	I	G	W	L	I	V	E	D	L	V	M	V	L	T	L	V	L	L
Query Conservation																					.	.																																.
Alig confidence																					.	.																																.
Template Conservation
Template Sequence		A	F	P	V	I	A	A	I	G	G	M	I	V	P	A	L	L	Y	L	A	F	N	Y	A	D	P	I	T	R	E	G	W	A	I	P	A	A	T	D	I	A	F	A	L	G	V	L	A	L	L	G	S	R	V	P	L	A	L	K	I	F	L	M	A	L	A	I	I	D	D	L	G	A	I	I	I	I	A	L	F
Template Known Secondary structure												T	T	T	T					G	G	G			S	S	T	T					T	S	S	S	S													S	S		S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	V	A	G	M	M	E	Q	G	D	V	G	F	A	T	L	A	V	D	M	G	I	T	I	G	K	V	I	A	F	I	A	I	M	M	L	V	G	R	R	L	V	P	W	I	M	A	R	S	A	A	T	G	S	R	E	L	F	T	L	S	V	L	A	L	A	L	G	V	A	F	G	A	V	E	L	F	D	V
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	N	D	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	S	L	G	V	A	A	V	A	I	A	V	L	A	V	L	N	L	C	G	A	R	R	T	G	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	V	G	V	V	L	W	T	A	V	L	K	S	G	V
Template Known Secondary structure		S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T				T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180																.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																					.	.	.	.	.											.									.																.
Query SS confidence																					.	.	.	.	.											.									.																.
Query Sequence		S	F	A	L	G	A	F	F	A	G	M	V	L	N	E	S	E	L	S	.	.	.	.	.	H	R	A	A	H	D	T	L	P	L	.	R	D	A	F	A	V	L	F	.	F	V	S	V	G	M	L	F	D	P	L	I	L	I	Q	.	Q	P	L	A	V	L	A	T	L	A	I	I	L	F	G	K	S	L	A	A
Query Conservation																					.	.	.	.	.											.									.																.
Alig confidence																					.	.	.	.	.											.									.																.
Template Conservation
Template Sequence		H	A	T	L	A	G	V	I	V	G	F	F	I	P	L	K	E	K	H	G	R	S	P	A	K	R	L	E	H	V	L	H	P	W	V	A	Y	L	I	L	P	L	F	A	F	A	N	A	G	V	S	L	Q	G	V	T	L	D	G	L	T	S	I	L	P	L	G	I	I	A	G	L	L	I	G	K	P	L	G	I
Template Known Secondary structure														S				G	G	G	S	S																	T															S	S	S				T					S	S	T	T	T	T						T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		321	.	.	.	.	.											.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.
Query Sequence		F	F	L	V	R	L	.	.	.	.	.	.	.	.	.	.	F	G	H	S	Q	R	T	A	L	T	I	A	A	S	L	A	Q	I	G	E	F	A	F	I	L	A	G	L	G	M	A	L	N	L	L	P	Q	A	G	Q	N	L	V	L	A	G	A	I	L	S	I	M	L	N	P	V	L	F	A	L	L	E	K	Y
Query Conservation								.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																																																.	.
Template Sequence		S	L	F	C	W	L	A	L	R	L	K	L	A	H	L	P	E	G	T	T	Y	Q	Q	I	M	V	V	G	I	L	C	G	I	G	F	T	M	S	I	F	I	A	S	L	A	F	.	.	G	S	V	D	P	E	L	I	N	W	A	K	L	G	I	L	V	G	S	I	S	S	A	V	I	G	Y	S	W	L	R	V
Template Known Secondary structure		T	T					T	S	S		T	T	T					S			G	G	G	G	T	T					T	T														S	.	.	T	T	S	S		S	S														T	T	T	S	T	T	T	G	G	G	T	T
Template Predicted Secondary structure																																																.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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